Warning: Permanently added '2620:52:3:1:dead:beef:cafe:c29f' (ED25519) to the list of known hosts. Running: /usr/bin/copr-rpmbuild --verbose --drop-resultdir --build-id 5186268 --chroot fedora-rawhide-ppc64le --detached Version: 0.62 PID: 23806 Logging PID: 23807 Task: {'appstream': False, 'background': True, 'build_id': 5186268, 'buildroot_pkgs': [], 'chroot': 'fedora-rawhide-ppc64le', 'enable_net': False, 'fedora_review': False, 'git_hash': '0f42489aa6ec0842fe9f2806cfff3a1fd139673a', 'git_repo': 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/seqan', 'isolation': 'default', 'memory_reqs': 2048, 'package_name': 'seqan', 'package_version': '1.4.2-50', 'project_dirname': 'gcc-13-test', 'project_name': 'gcc-13-test', 'project_owner': 'jakub', 'repos': [{'baseurl': 'https://download.copr.fedorainfracloud.org/results/jakub/gcc-13-test/fedora-rawhide-ppc64le/', 'id': 'copr_base', 'name': 'Copr repository'}, {'baseurl': 'https://jakub.fedorapeople.org/fedora-gcc13-$arch/', 'id': 'https_jakub_fedorapeople_org_fedora_gcc13_arch', 'name': 'Additional repo https_jakub_fedorapeople_org_fedora_gcc13_arch'}], 'sandbox': 'jakub/gcc-13-test--jakub', 'source_json': {}, 'source_type': None, 'submitter': 'jakub', 'tags': [], 'task_id': '5186268-fedora-rawhide-ppc64le', 'timeout': 115200, 'uses_devel_repo': False, 'with_opts': [], 'without_opts': []} Running: git clone https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/seqan /var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan --depth 500 --no-single-branch --recursive cmd: ['git', 'clone', 'https://copr-dist-git.fedorainfracloud.org/git/jakub/gcc-13-test/seqan', '/var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan', '--depth', '500', '--no-single-branch', '--recursive'] cwd: . rc: 0 stdout: stderr: Cloning into '/var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan'... Running: git checkout 0f42489aa6ec0842fe9f2806cfff3a1fd139673a cmd: ['git', 'checkout', '0f42489aa6ec0842fe9f2806cfff3a1fd139673a'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan rc: 0 stdout: stderr: Note: switching to '0f42489aa6ec0842fe9f2806cfff3a1fd139673a'. You are in 'detached HEAD' state. You can look around, make experimental changes and commit them, and you can discard any commits you make in this state without impacting any branches by switching back to a branch. If you want to create a new branch to retain commits you create, you may do so (now or later) by using -c with the switch command. Example: git switch -c Or undo this operation with: git switch - Turn off this advice by setting config variable advice.detachedHead to false HEAD is now at 0f42489 automatic import of seqan Running: copr-distgit-client sources cmd: ['copr-distgit-client', 'sources'] cwd: /var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan rc: 0 stdout: stderr: INFO: Reading stdout from command: git rev-parse --abbrev-ref HEAD INFO: Reading stdout from command: git rev-parse HEAD INFO: Reading sources specification file: sources INFO: Downloading seqan-src-1.4.2.tar.gz INFO: Calling: curl -H Pragma: -o seqan-src-1.4.2.tar.gz --location --remote-time --show-error --fail https://copr-dist-git.fedorainfracloud.org/repo/pkgs/jakub/gcc-13-test/seqan/seqan-src-1.4.2.tar.gz/md5/e7d2c6cf6474b5186c27ec31bd32738a/seqan-src-1.4.2.tar.gz /usr/bin/tail: /var/lib/copr-rpmbuild/main.log: file truncated % Total % Received % Xferd Average Speed Time Time Time Current Dload Upload Total Spent Left Speed 100 115M 100 115M 0 0 27.2M 0 0:00:04 0:00:04 --:--:-- 27.2M INFO: Reading stdout from command: md5sum seqan-src-1.4.2.tar.gz Running (timeout=115200): unbuffer mock --buildsrpm --spec /var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan/seqan.spec --sources /var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672302897.527342 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan/seqan.spec) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672302897.527342/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start(bootstrap): dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Updating Subscription Management repositories. Unable to read consumer identity This system is not registered with an entitlement server. You can use subscription-manager to register. Copr repository 18 MB/s | 38 MB 00:02 Additional repo https_jakub_fedorapeople_org_fe 232 kB/s | 84 kB 00:00 fedora 19 MB/s | 60 MB 00:03 Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing: dnf noarch 4.14.0-1.fc38 fedora 480 k dnf-plugins-core noarch 4.3.1-1.fc38 fedora 34 k Installing dependencies: alternatives ppc64le 1.21-1.fc38 copr_base 41 k audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k basesystem noarch 11-14.fc37 fedora 7.0 k bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl ppc64le 7.87.0-1.fc38 copr_base 348 k cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k dbus-libs ppc64le 1:1.14.4-1.fc38 copr_base 177 k dnf-data noarch 4.14.0-1.fc38 fedora 43 k elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k expat ppc64le 2.5.0-1.fc38 copr_base 117 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-common noarch 38-0.6 fedora 21 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file-libs ppc64le 5.42-4.fc38 copr_base 688 k filesystem ppc64le 3.18-2.fc37 fedora 1.1 M findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k glib2 ppc64le 2.74.1-2.fc38 copr_base 2.8 M glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k gnupg2 ppc64le 2.3.8-1.fc38 copr_base 2.7 M gnutls ppc64le 3.7.8-9.fc38 copr_base 1.1 M gpgme ppc64le 1.17.1-3.fc38 copr_base 229 k grep ppc64le 3.8-1.fc38 copr_base 293 k ima-evm-utils ppc64le 1.4-6.fc38 copr_base 67 k json-c ppc64le 0.16-3.fc38 copr_base 46 k keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k libacl ppc64le 2.3.1-4.fc38 copr_base 26 k libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k libassuan ppc64le 2.5.5-5.fc38 copr_base 71 k libattr ppc64le 2.5.1-5.fc38 copr_base 19 k libb2 ppc64le 0.98.1-7.fc38 copr_base 26 k libblkid ppc64le 2.38.1-3.fc38 fedora 122 k libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k libcap ppc64le 2.48-5.fc38 copr_base 73 k libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k libcomps ppc64le 0.1.18-4.fc38 copr_base 84 k libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k libdnf ppc64le 0.68.0-1.fc38 copr_base 668 k libevent ppc64le 2.1.12-7.fc38 copr_base 276 k libffi ppc64le 3.4.4-1.fc38 copr_base 39 k libfsverity ppc64le 1.4-8.fc38 copr_base 20 k libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k libgcrypt ppc64le 1.10.1-6.fc38 copr_base 596 k libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k libgpg-error ppc64le 1.46-1.fc38 copr_base 233 k libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k libksba ppc64le 1.6.3-1.fc38 copr_base 175 k libmodulemd ppc64le 2.14.0-4.fc38 copr_base 233 k libmount ppc64le 2.38.1-3.fc38 fedora 154 k libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k libpsl ppc64le 0.21.1-6.fc38 copr_base 67 k librepo ppc64le 1.15.1-1.fc38 copr_base 104 k libreport-filesystem noarch 2.17.6-1.fc38 copr_base 14 k libselinux ppc64le 3.5-0.rc1.1.fc38 fedora 99 k libsemanage ppc64le 3.5-0.rc1.1.fc38 fedora 131 k libsepol ppc64le 3.5-0.rc1.1.fc38 fedora 356 k libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k libsolv ppc64le 0.7.22-3.fc38 copr_base 467 k libssh ppc64le 0.10.4-2.fc38 copr_base 236 k libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k libunistring ppc64le 1.0-2.fc38 copr_base 575 k libuuid ppc64le 2.38.1-3.fc38 fedora 29 k libverto ppc64le 0.3.2-4.fc38 copr_base 23 k libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k libyaml ppc64le 0.2.5-8.fc38 copr_base 70 k libzstd ppc64le 1.5.2-3.fc37 fedora 316 k lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k mpdecimal ppc64le 2.5.1-4.fc38 copr_base 118 k mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k nettle ppc64le 3.8-2.fc38 copr_base 443 k npth ppc64le 1.6-10.fc38 copr_base 25 k openldap ppc64le 2.6.3-1.fc38 copr_base 288 k openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k popt ppc64le 1.19-1.fc38 copr_base 64 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 ppc64le 3.11.1-1.fc38 copr_base 28 k python3-dateutil noarch 1:2.8.2-4.fc37 fedora 361 k python3-dbus ppc64le 1.3.2-1.fc38 copr_base 152 k python3-distro noarch 1.8.0-1.fc38 fedora 49 k python3-dnf noarch 4.14.0-1.fc38 fedora 607 k python3-dnf-plugins-core noarch 4.3.1-1.fc38 fedora 277 k python3-gpg ppc64le 1.17.1-3.fc38 copr_base 285 k python3-hawkey ppc64le 0.68.0-1.fc38 copr_base 109 k python3-libcomps ppc64le 0.1.18-4.fc38 copr_base 53 k python3-libdnf ppc64le 0.68.0-1.fc38 copr_base 815 k python3-libs ppc64le 3.11.1-1.fc38 copr_base 9.3 M python3-rpm ppc64le 4.18.0-8.fc38 copr_base 102 k python3-six noarch 1.16.0-8.fc37 fedora 42 k readline ppc64le 8.2-2.fc38 copr_base 229 k rpm ppc64le 4.18.0-8.fc38 copr_base 538 k rpm-build-libs ppc64le 4.18.0-8.fc38 copr_base 103 k rpm-libs ppc64le 4.18.0-8.fc38 copr_base 355 k rpm-sequoia ppc64le 1.2.0-1.fc38 copr_base 1.4 M rpm-sign-libs ppc64le 4.18.0-8.fc38 copr_base 27 k sed ppc64le 4.8-11.fc38 copr_base 304 k setup noarch 2.14.3-1.fc38 fedora 152 k shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k systemd-libs ppc64le 252.4-598.fc38 fedora 666 k tpm2-tss ppc64le 4.0.0-0.1.rc2.fc38 fedora 631 k tzdata noarch 2022g-1.fc38 fedora 716 k xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k zchunk-libs ppc64le 1.2.3-1.fc38 fedora 55 k zlib ppc64le 1.2.13-1.fc38 fedora 100 k Transaction Summary ========================================================================================================================== Install 137 Packages Total download size: 59 M Installed size: 284 M Downloading Packages: (1/137): bzip2-libs-1.0.8-12.fc38.ppc64le.rpm 238 kB/s | 48 kB 00:00 (2/137): alternatives-1.21-1.fc38.ppc64le.rpm 193 kB/s | 41 kB 00:00 (3/137): coreutils-9.1-8.fc38.ppc64le.rpm 8.9 MB/s | 1.3 MB 00:00 (4/137): coreutils-common-9.1-8.fc38.ppc64le.rp 9.0 MB/s | 2.0 MB 00:00 (5/137): curl-7.87.0-1.fc38.ppc64le.rpm 3.7 MB/s | 348 kB 00:00 (6/137): cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.r 19 MB/s | 882 kB 00:00 (7/137): bash-5.2.9-3.fc38.ppc64le.rpm 3.7 MB/s | 1.9 MB 00:00 (8/137): dbus-libs-1.14.4-1.fc38.ppc64le.rpm 3.4 MB/s | 177 kB 00:00 (9/137): elfutils-default-yama-scope-0.188-3.fc 1.1 MB/s | 16 kB 00:00 (10/137): elfutils-libelf-0.188-3.fc38.ppc64le. 12 MB/s | 205 kB 00:00 (11/137): elfutils-libs-0.188-3.fc38.ppc64le.rp 11 MB/s | 291 kB 00:00 (12/137): expat-2.5.0-1.fc38.ppc64le.rpm 3.8 MB/s | 117 kB 00:00 (13/137): file-libs-5.42-4.fc38.ppc64le.rpm 17 MB/s | 688 kB 00:00 (14/137): findutils-4.9.0-2.fc38.ppc64le.rpm 11 MB/s | 530 kB 00:00 (15/137): gawk-5.1.1-4.fc38.ppc64le.rpm 12 MB/s | 1.0 MB 00:00 (16/137): gdbm-libs-1.23-2.fc38.ppc64le.rpm 1.1 MB/s | 62 kB 00:00 (17/137): gmp-6.2.1-3.fc38.ppc64le.rpm 3.8 MB/s | 304 kB 00:00 (18/137): glib2-2.74.1-2.fc38.ppc64le.rpm 15 MB/s | 2.8 MB 00:00 (19/137): gpgme-1.17.1-3.fc38.ppc64le.rpm 2.7 MB/s | 229 kB 00:00 (20/137): gnutls-3.7.8-9.fc38.ppc64le.rpm 6.5 MB/s | 1.1 MB 00:00 (21/137): gnupg2-2.3.8-1.fc38.ppc64le.rpm 11 MB/s | 2.7 MB 00:00 (22/137): grep-3.8-1.fc38.ppc64le.rpm 9.6 MB/s | 293 kB 00:00 (23/137): ima-evm-utils-1.4-6.fc38.ppc64le.rpm 2.8 MB/s | 67 kB 00:00 (24/137): json-c-0.16-3.fc38.ppc64le.rpm 4.2 MB/s | 46 kB 00:00 (25/137): keyutils-libs-1.6.1-5.fc38.ppc64le.rp 3.1 MB/s | 33 kB 00:00 (26/137): krb5-libs-1.20.1-3.fc38.ppc64le.rpm 22 MB/s | 805 kB 00:00 (27/137): libacl-2.3.1-4.fc38.ppc64le.rpm 722 kB/s | 26 kB 00:00 (28/137): libarchive-3.6.1-3.fc38.ppc64le.rpm 9.1 MB/s | 464 kB 00:00 (29/137): libassuan-2.5.5-5.fc38.ppc64le.rpm 4.2 MB/s | 71 kB 00:00 (30/137): libattr-2.5.1-5.fc38.ppc64le.rpm 1.2 MB/s | 19 kB 00:00 (31/137): libb2-0.98.1-7.fc38.ppc64le.rpm 2.5 MB/s | 26 kB 00:00 (32/137): libbrotli-1.0.9-9.fc38.ppc64le.rpm 16 MB/s | 345 kB 00:00 (33/137): libcap-2.48-5.fc38.ppc64le.rpm 3.1 MB/s | 73 kB 00:00 (34/137): libcap-ng-0.8.3-4.fc38.ppc64le.rpm 2.4 MB/s | 34 kB 00:00 (35/137): libcom_err-1.46.5-3.fc38.ppc64le.rpm 2.6 MB/s | 26 kB 00:00 (36/137): libcomps-0.1.18-4.fc38.ppc64le.rpm 7.2 MB/s | 84 kB 00:00 (37/137): libcurl-7.87.0-1.fc38.ppc64le.rpm 15 MB/s | 334 kB 00:00 (38/137): libdnf-0.68.0-1.fc38.ppc64le.rpm 19 MB/s | 668 kB 00:00 (39/137): libevent-2.1.12-7.fc38.ppc64le.rpm 7.0 MB/s | 276 kB 00:00 (40/137): libffi-3.4.4-1.fc38.ppc64le.rpm 1.3 MB/s | 39 kB 00:00 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libssh-config-0.10.4-2.fc38.noarch.rp 378 kB/s | 9.2 kB 00:00 (56/137): libtasn1-4.19.0-1.fc38.ppc64le.rpm 6.7 MB/s | 81 kB 00:00 (57/137): libtirpc-1.3.3-0.fc38.ppc64le.rpm 8.1 MB/s | 108 kB 00:00 (58/137): libunistring-1.0-2.fc38.ppc64le.rpm 18 MB/s | 575 kB 00:00 (59/137): libverto-0.3.2-4.fc38.ppc64le.rpm 808 kB/s | 23 kB 00:00 (60/137): libxcrypt-4.4.33-5.fc38.ppc64le.rpm 6.3 MB/s | 133 kB 00:00 (61/137): libxml2-2.10.3-2.fc38.ppc64le.rpm 22 MB/s | 780 kB 00:00 (62/137): libyaml-0.2.5-8.fc38.ppc64le.rpm 1.9 MB/s | 70 kB 00:00 (63/137): lua-libs-5.4.4-6.fc38.ppc64le.rpm 3.8 MB/s | 149 kB 00:00 (64/137): lz4-libs-1.9.3-5.fc38.ppc64le.rpm 7.5 MB/s | 90 kB 00:00 (65/137): mpdecimal-2.5.1-4.fc38.ppc64le.rpm 8.1 MB/s | 118 kB 00:00 (66/137): mpfr-4.1.1-2.fc38.ppc64le.rpm 19 MB/s | 609 kB 00:00 (67/137): ncurses-base-6.3-5.20221126.fc38.noar 2.5 MB/s | 62 kB 00:00 (68/137): ncurses-libs-6.3-5.20221126.fc38.ppc6 11 MB/s | 374 kB 00:00 (69/137): nettle-3.8-2.fc38.ppc64le.rpm 16 MB/s | 443 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crypto-policies-20221215-1.gita4c31a3 1.2 MB/s | 90 kB 00:00 (99/137): dnf-data-4.14.0-1.fc38.noarch.rpm 1.5 MB/s | 43 kB 00:00 (100/137): dnf-4.14.0-1.fc38.noarch.rpm 6.3 MB/s | 480 kB 00:00 (101/137): dnf-plugins-core-4.3.1-1.fc38.noarch 1.3 MB/s | 34 kB 00:00 (102/137): fedora-gpg-keys-38-0.3.noarch.rpm 4.8 MB/s | 125 kB 00:00 (103/137): fedora-release-38-0.6.noarch.rpm 475 kB/s | 11 kB 00:00 (104/137): fedora-release-common-38-0.6.noarch. 962 kB/s | 21 kB 00:00 (105/137): ca-certificates-2022.2.54-5.fc37.noa 4.4 MB/s | 829 kB 00:00 (106/137): fedora-release-identity-basic-38-0.6 508 kB/s | 11 kB 00:00 (107/137): fedora-repos-38-0.3.noarch.rpm 472 kB/s | 10 kB 00:00 (108/137): fedora-repos-rawhide-38-0.3.noarch.r 446 kB/s | 9.7 kB 00:00 (109/137): glibc-common-2.36.9000-19.fc38.ppc64 11 MB/s | 322 kB 00:00 (110/137): glibc-minimal-langpack-2.36.9000-19. 1.3 MB/s | 30 kB 00:00 (111/137): glibc-2.36.9000-19.fc38.ppc64le.rpm 27 MB/s | 2.2 MB 00:00 (112/137): 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python3-dnf-plugins-core-4.3.1-1.fc3 11 MB/s | 277 kB 00:00 (127/137): python3-dnf-4.14.0-1.fc38.noarch.rpm 17 MB/s | 607 kB 00:00 (128/137): python3-six-1.16.0-8.fc37.noarch.rpm 1.9 MB/s | 42 kB 00:00 (129/137): setup-2.14.3-1.fc38.noarch.rpm 6.3 MB/s | 152 kB 00:00 (130/137): sqlite-libs-3.40.0-1.fc38.ppc64le.rp 23 MB/s | 776 kB 00:00 (131/137): shadow-utils-4.13-3.fc38.ppc64le.rpm 23 MB/s | 1.3 MB 00:00 (132/137): systemd-libs-252.4-598.fc38.ppc64le. 17 MB/s | 666 kB 00:00 (133/137): tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le. 20 MB/s | 631 kB 00:00 (134/137): xz-libs-5.2.9-1.fc38.ppc64le.rpm 4.1 MB/s | 104 kB 00:00 (135/137): tzdata-2022g-1.fc38.noarch.rpm 20 MB/s | 716 kB 00:00 (136/137): zchunk-libs-1.2.3-1.fc38.ppc64le.rpm 2.4 MB/s | 55 kB 00:00 (137/137): zlib-1.2.13-1.fc38.ppc64le.rpm 4.1 MB/s | 100 kB 00:00 -------------------------------------------------------------------------------- Total 23 MB/s | 59 MB 00:02 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.0.0-0.4.fc38.ppc64le 1/137 Running scriptlet: libgcc-13.0.0-0.4.fc38.ppc64le 1/137 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/137 Installing : tzdata-2022g-1.fc38.noarch 3/137 Installing : fedora-release-identity-basic-38-0.6.noarch 4/137 Installing : python-setuptools-wheel-65.5.1-1.fc38.noarch 5/137 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/137 Installing : fedora-gpg-keys-38-0.3.noarch 7/137 Installing : fedora-release-38-0.6.noarch 8/137 Installing : fedora-release-common-38-0.6.noarch 9/137 Installing : fedora-repos-rawhide-38-0.3.noarch 10/137 Installing : fedora-repos-38-0.3.noarch 11/137 Installing : setup-2.14.3-1.fc38.noarch 12/137 Running scriptlet: setup-2.14.3-1.fc38.noarch 12/137 Installing : filesystem-3.18-2.fc37.ppc64le 13/137 Installing : 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ca-certificates-2022.2.54-5.fc37.noarch 101/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 101/137 Installing : krb5-libs-1.20.1-3.fc38.ppc64le 102/137 Installing : libtirpc-1.3.3-0.fc38.ppc64le 103/137 Installing : libfsverity-1.4-8.fc38.ppc64le 104/137 Installing : zchunk-libs-1.2.3-1.fc38.ppc64le 105/137 Installing : libsolv-0.7.22-3.fc38.ppc64le 106/137 Installing : libnsl2-2.0.0-4.fc38.ppc64le 107/137 Installing : libssh-0.10.4-2.fc38.ppc64le 108/137 Installing : python-pip-wheel-22.3.1-1.fc38.noarch 109/137 Installing : python3-3.11.1-1.fc38.ppc64le 110/137 Installing : python3-libs-3.11.1-1.fc38.ppc64le 111/137 Installing : python3-dbus-1.3.2-1.fc38.ppc64le 112/137 Installing : python3-libcomps-0.1.18-4.fc38.ppc64le 113/137 Installing : python3-distro-1.8.0-1.fc38.noarch 114/137 Installing : python3-six-1.16.0-8.fc37.noarch 115/137 Installing : python3-dateutil-1:2.8.2-4.fc37.noarch 116/137 Installing : libarchive-3.6.1-3.fc38.ppc64le 117/137 Installing : libevent-2.1.12-7.fc38.ppc64le 118/137 Installing : openldap-2.6.3-1.fc38.ppc64le 119/137 Installing : libcurl-7.87.0-1.fc38.ppc64le 120/137 Installing : gnupg2-2.3.8-1.fc38.ppc64le 121/137 Installing : gpgme-1.17.1-3.fc38.ppc64le 122/137 Installing : librepo-1.15.1-1.fc38.ppc64le 123/137 Installing : libdnf-0.68.0-1.fc38.ppc64le 124/137 Installing : python3-libdnf-0.68.0-1.fc38.ppc64le 125/137 Installing : python3-hawkey-0.68.0-1.fc38.ppc64le 126/137 Installing : python3-gpg-1.17.1-3.fc38.ppc64le 127/137 Installing : curl-7.87.0-1.fc38.ppc64le 128/137 Running scriptlet: tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 129/137 useradd: Warning: missing or non-executable shell '/usr/sbin/nologin' Installing : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 129/137 Installing : ima-evm-utils-1.4-6.fc38.ppc64le 130/137 Installing : rpm-sign-libs-4.18.0-8.fc38.ppc64le 131/137 Installing : python3-rpm-4.18.0-8.fc38.ppc64le 132/137 Installing : python3-dnf-4.14.0-1.fc38.noarch 133/137 Installing : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 134/137 Installing : dnf-plugins-core-4.3.1-1.fc38.noarch 135/137 Installing : dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: dnf-4.14.0-1.fc38.noarch 136/137 Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 137/137 Installing : rpm-4.18.0-8.fc38.ppc64le 137/137 Running scriptlet: filesystem-3.18-2.fc37.ppc64le 137/137 Running scriptlet: ca-certificates-2022.2.54-5.fc37.noarch 137/137 Running scriptlet: rpm-4.18.0-8.fc38.ppc64le 137/137 Verifying : alternatives-1.21-1.fc38.ppc64le 1/137 Verifying : bash-5.2.9-3.fc38.ppc64le 2/137 Verifying : bzip2-libs-1.0.8-12.fc38.ppc64le 3/137 Verifying : coreutils-9.1-8.fc38.ppc64le 4/137 Verifying : coreutils-common-9.1-8.fc38.ppc64le 5/137 Verifying : curl-7.87.0-1.fc38.ppc64le 6/137 Verifying : cyrus-sasl-lib-2.1.28-8.fc38.ppc64le 7/137 Verifying : dbus-libs-1:1.14.4-1.fc38.ppc64le 8/137 Verifying : elfutils-default-yama-scope-0.188-3.fc38.noarch 9/137 Verifying : elfutils-libelf-0.188-3.fc38.ppc64le 10/137 Verifying : elfutils-libs-0.188-3.fc38.ppc64le 11/137 Verifying : expat-2.5.0-1.fc38.ppc64le 12/137 Verifying : file-libs-5.42-4.fc38.ppc64le 13/137 Verifying : findutils-1:4.9.0-2.fc38.ppc64le 14/137 Verifying : gawk-5.1.1-4.fc38.ppc64le 15/137 Verifying : gdbm-libs-1:1.23-2.fc38.ppc64le 16/137 Verifying : glib2-2.74.1-2.fc38.ppc64le 17/137 Verifying : gmp-1:6.2.1-3.fc38.ppc64le 18/137 Verifying : gnupg2-2.3.8-1.fc38.ppc64le 19/137 Verifying : gnutls-3.7.8-9.fc38.ppc64le 20/137 Verifying : gpgme-1.17.1-3.fc38.ppc64le 21/137 Verifying : grep-3.8-1.fc38.ppc64le 22/137 Verifying : ima-evm-utils-1.4-6.fc38.ppc64le 23/137 Verifying : json-c-0.16-3.fc38.ppc64le 24/137 Verifying : keyutils-libs-1.6.1-5.fc38.ppc64le 25/137 Verifying : krb5-libs-1.20.1-3.fc38.ppc64le 26/137 Verifying : libacl-2.3.1-4.fc38.ppc64le 27/137 Verifying : libarchive-3.6.1-3.fc38.ppc64le 28/137 Verifying : libassuan-2.5.5-5.fc38.ppc64le 29/137 Verifying : libattr-2.5.1-5.fc38.ppc64le 30/137 Verifying : libb2-0.98.1-7.fc38.ppc64le 31/137 Verifying : libbrotli-1.0.9-9.fc38.ppc64le 32/137 Verifying : libcap-2.48-5.fc38.ppc64le 33/137 Verifying : libcap-ng-0.8.3-4.fc38.ppc64le 34/137 Verifying : libcom_err-1.46.5-3.fc38.ppc64le 35/137 Verifying : libcomps-0.1.18-4.fc38.ppc64le 36/137 Verifying : libcurl-7.87.0-1.fc38.ppc64le 37/137 Verifying : libdnf-0.68.0-1.fc38.ppc64le 38/137 Verifying : libevent-2.1.12-7.fc38.ppc64le 39/137 Verifying : libffi-3.4.4-1.fc38.ppc64le 40/137 Verifying : libfsverity-1.4-8.fc38.ppc64le 41/137 Verifying : libgcrypt-1.10.1-6.fc38.ppc64le 42/137 Verifying : libgpg-error-1.46-1.fc38.ppc64le 43/137 Verifying : libidn2-2.3.4-1.fc38.ppc64le 44/137 Verifying : libksba-1.6.3-1.fc38.ppc64le 45/137 Verifying : libmodulemd-2.14.0-4.fc38.ppc64le 46/137 Verifying : libnghttp2-1.51.0-1.fc38.ppc64le 47/137 Verifying : libnsl2-2.0.0-4.fc38.ppc64le 48/137 Verifying : libpsl-0.21.1-6.fc38.ppc64le 49/137 Verifying : librepo-1.15.1-1.fc38.ppc64le 50/137 Verifying : libreport-filesystem-2.17.6-1.fc38.noarch 51/137 Verifying : libsigsegv-2.14-3.fc38.ppc64le 52/137 Verifying : libsolv-0.7.22-3.fc38.ppc64le 53/137 Verifying : libssh-0.10.4-2.fc38.ppc64le 54/137 Verifying : libssh-config-0.10.4-2.fc38.noarch 55/137 Verifying : libtasn1-4.19.0-1.fc38.ppc64le 56/137 Verifying : libtirpc-1.3.3-0.fc38.ppc64le 57/137 Verifying : libunistring-1.0-2.fc38.ppc64le 58/137 Verifying : libverto-0.3.2-4.fc38.ppc64le 59/137 Verifying : libxcrypt-4.4.33-5.fc38.ppc64le 60/137 Verifying : libxml2-2.10.3-2.fc38.ppc64le 61/137 Verifying : libyaml-0.2.5-8.fc38.ppc64le 62/137 Verifying : lua-libs-5.4.4-6.fc38.ppc64le 63/137 Verifying : lz4-libs-1.9.3-5.fc38.ppc64le 64/137 Verifying : mpdecimal-2.5.1-4.fc38.ppc64le 65/137 Verifying : mpfr-4.1.1-2.fc38.ppc64le 66/137 Verifying : ncurses-base-6.3-5.20221126.fc38.noarch 67/137 Verifying : ncurses-libs-6.3-5.20221126.fc38.ppc64le 68/137 Verifying : nettle-3.8-2.fc38.ppc64le 69/137 Verifying : npth-1.6-10.fc38.ppc64le 70/137 Verifying : openldap-2.6.3-1.fc38.ppc64le 71/137 Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 72/137 Verifying : p11-kit-0.24.1-5.fc38.ppc64le 73/137 Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 74/137 Verifying : pcre2-10.40-1.fc38.1.ppc64le 75/137 Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 76/137 Verifying : popt-1.19-1.fc38.ppc64le 77/137 Verifying : python3-3.11.1-1.fc38.ppc64le 78/137 Verifying : python3-dbus-1.3.2-1.fc38.ppc64le 79/137 Verifying : python3-gpg-1.17.1-3.fc38.ppc64le 80/137 Verifying : python3-hawkey-0.68.0-1.fc38.ppc64le 81/137 Verifying : python3-libcomps-0.1.18-4.fc38.ppc64le 82/137 Verifying : python3-libdnf-0.68.0-1.fc38.ppc64le 83/137 Verifying : python3-libs-3.11.1-1.fc38.ppc64le 84/137 Verifying : python3-rpm-4.18.0-8.fc38.ppc64le 85/137 Verifying : readline-8.2-2.fc38.ppc64le 86/137 Verifying : rpm-4.18.0-8.fc38.ppc64le 87/137 Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 88/137 Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 89/137 Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 90/137 Verifying : rpm-sign-libs-4.18.0-8.fc38.ppc64le 91/137 Verifying : sed-4.8-11.fc38.ppc64le 92/137 Verifying : libgcc-13.0.0-0.4.fc38.ppc64le 93/137 Verifying : libgomp-13.0.0-0.4.fc38.ppc64le 94/137 Verifying : libstdc++-13.0.0-0.4.fc38.ppc64le 95/137 Verifying : audit-libs-3.0.9-2.fc38.ppc64le 96/137 Verifying : basesystem-11-14.fc37.noarch 97/137 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 98/137 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 99/137 Verifying : dnf-4.14.0-1.fc38.noarch 100/137 Verifying : dnf-data-4.14.0-1.fc38.noarch 101/137 Verifying : dnf-plugins-core-4.3.1-1.fc38.noarch 102/137 Verifying : fedora-gpg-keys-38-0.3.noarch 103/137 Verifying : fedora-release-38-0.6.noarch 104/137 Verifying : fedora-release-common-38-0.6.noarch 105/137 Verifying : fedora-release-identity-basic-38-0.6.noarch 106/137 Verifying : fedora-repos-38-0.3.noarch 107/137 Verifying : fedora-repos-rawhide-38-0.3.noarch 108/137 Verifying : filesystem-3.18-2.fc37.ppc64le 109/137 Verifying : glibc-2.36.9000-19.fc38.ppc64le 110/137 Verifying : glibc-common-2.36.9000-19.fc38.ppc64le 111/137 Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 112/137 Verifying : libblkid-2.38.1-3.fc38.ppc64le 113/137 Verifying : libmount-2.38.1-3.fc38.ppc64le 114/137 Verifying : libselinux-3.5-0.rc1.1.fc38.ppc64le 115/137 Verifying : libsemanage-3.5-0.rc1.1.fc38.ppc64le 116/137 Verifying : libsepol-3.5-0.rc1.1.fc38.ppc64le 117/137 Verifying : libsmartcols-2.38.1-3.fc38.ppc64le 118/137 Verifying : libuuid-2.38.1-3.fc38.ppc64le 119/137 Verifying : libzstd-1.5.2-3.fc37.ppc64le 120/137 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 121/137 Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 122/137 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 123/137 Verifying : python3-dateutil-1:2.8.2-4.fc37.noarch 124/137 Verifying : python3-distro-1.8.0-1.fc38.noarch 125/137 Verifying : python3-dnf-4.14.0-1.fc38.noarch 126/137 Verifying : python3-dnf-plugins-core-4.3.1-1.fc38.noarch 127/137 Verifying : python3-six-1.16.0-8.fc37.noarch 128/137 Verifying : setup-2.14.3-1.fc38.noarch 129/137 Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 130/137 Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 131/137 Verifying : systemd-libs-252.4-598.fc38.ppc64le 132/137 Verifying : tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le 133/137 Verifying : tzdata-2022g-1.fc38.noarch 134/137 Verifying : xz-libs-5.2.9-1.fc38.ppc64le 135/137 Verifying : zchunk-libs-1.2.3-1.fc38.ppc64le 136/137 Verifying : zlib-1.2.13-1.fc38.ppc64le 137/137 Installed products updated. Installed: alternatives-1.21-1.fc38.ppc64le audit-libs-3.0.9-2.fc38.ppc64le basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.ppc64le bzip2-libs-1.0.8-12.fc38.ppc64le ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le dbus-libs-1:1.14.4-1.fc38.ppc64le dnf-4.14.0-1.fc38.noarch dnf-data-4.14.0-1.fc38.noarch dnf-plugins-core-4.3.1-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.ppc64le elfutils-libs-0.188-3.fc38.ppc64le expat-2.5.0-1.fc38.ppc64le fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-libs-5.42-4.fc38.ppc64le filesystem-3.18-2.fc37.ppc64le findutils-1:4.9.0-2.fc38.ppc64le gawk-5.1.1-4.fc38.ppc64le gdbm-libs-1:1.23-2.fc38.ppc64le glib2-2.74.1-2.fc38.ppc64le glibc-2.36.9000-19.fc38.ppc64le glibc-common-2.36.9000-19.fc38.ppc64le glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le gmp-1:6.2.1-3.fc38.ppc64le gnupg2-2.3.8-1.fc38.ppc64le gnutls-3.7.8-9.fc38.ppc64le gpgme-1.17.1-3.fc38.ppc64le grep-3.8-1.fc38.ppc64le ima-evm-utils-1.4-6.fc38.ppc64le json-c-0.16-3.fc38.ppc64le keyutils-libs-1.6.1-5.fc38.ppc64le krb5-libs-1.20.1-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le libassuan-2.5.5-5.fc38.ppc64le libattr-2.5.1-5.fc38.ppc64le libb2-0.98.1-7.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le libbrotli-1.0.9-9.fc38.ppc64le libcap-2.48-5.fc38.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le libcom_err-1.46.5-3.fc38.ppc64le libcomps-0.1.18-4.fc38.ppc64le libcurl-7.87.0-1.fc38.ppc64le libdnf-0.68.0-1.fc38.ppc64le libevent-2.1.12-7.fc38.ppc64le libffi-3.4.4-1.fc38.ppc64le libfsverity-1.4-8.fc38.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le libgcrypt-1.10.1-6.fc38.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le libgpg-error-1.46-1.fc38.ppc64le libidn2-2.3.4-1.fc38.ppc64le libksba-1.6.3-1.fc38.ppc64le libmodulemd-2.14.0-4.fc38.ppc64le libmount-2.38.1-3.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le libnsl2-2.0.0-4.fc38.ppc64le libpsl-0.21.1-6.fc38.ppc64le librepo-1.15.1-1.fc38.ppc64le libreport-filesystem-2.17.6-1.fc38.noarch libselinux-3.5-0.rc1.1.fc38.ppc64le libsemanage-3.5-0.rc1.1.fc38.ppc64le libsepol-3.5-0.rc1.1.fc38.ppc64le libsigsegv-2.14-3.fc38.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le libsolv-0.7.22-3.fc38.ppc64le libssh-0.10.4-2.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le libtirpc-1.3.3-0.fc38.ppc64le libunistring-1.0-2.fc38.ppc64le libuuid-2.38.1-3.fc38.ppc64le libverto-0.3.2-4.fc38.ppc64le libxcrypt-4.4.33-5.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le libyaml-0.2.5-8.fc38.ppc64le libzstd-1.5.2-3.fc37.ppc64le lua-libs-5.4.4-6.fc38.ppc64le lz4-libs-1.9.3-5.fc38.ppc64le mpdecimal-2.5.1-4.fc38.ppc64le mpfr-4.1.1-2.fc38.ppc64le ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le nettle-3.8-2.fc38.ppc64le npth-1.6-10.fc38.ppc64le openldap-2.6.3-1.fc38.ppc64le openssl-libs-1:3.0.5-6.fc38.ppc64le p11-kit-0.24.1-5.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le pcre2-10.40-1.fc38.1.ppc64le pcre2-syntax-10.40-1.fc38.1.noarch popt-1.19-1.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.ppc64le python3-dateutil-1:2.8.2-4.fc37.noarch python3-dbus-1.3.2-1.fc38.ppc64le python3-distro-1.8.0-1.fc38.noarch python3-dnf-4.14.0-1.fc38.noarch python3-dnf-plugins-core-4.3.1-1.fc38.noarch python3-gpg-1.17.1-3.fc38.ppc64le python3-hawkey-0.68.0-1.fc38.ppc64le python3-libcomps-0.1.18-4.fc38.ppc64le python3-libdnf-0.68.0-1.fc38.ppc64le python3-libs-3.11.1-1.fc38.ppc64le python3-rpm-4.18.0-8.fc38.ppc64le python3-six-1.16.0-8.fc37.noarch readline-8.2-2.fc38.ppc64le rpm-4.18.0-8.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le rpm-sign-libs-4.18.0-8.fc38.ppc64le sed-4.8-11.fc38.ppc64le setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le systemd-libs-252.4-598.fc38.ppc64le tpm2-tss-4.0.0-0.1.rc2.fc38.ppc64le tzdata-2022g-1.fc38.noarch xz-libs-5.2.9-1.fc38.ppc64le zchunk-libs-1.2.3-1.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le Complete! Finish(bootstrap): dnf install Start(bootstrap): creating root cache Finish(bootstrap): creating root cache Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf install No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 11 kB/s | 3.0 kB 00:00 Copr repository 27 MB/s | 38 MB 00:01 Additional repo https_jakub_fedorapeople_org_fe 9.5 kB/s | 3.0 kB 00:00 fedora 24 kB/s | 6.7 kB 00:00 Dependencies resolved. ========================================================================================================================== Package Arch Version Repository Size ========================================================================================================================== Installing group/module packages: bash ppc64le 5.2.9-3.fc38 copr_base 1.9 M bzip2 ppc64le 1.0.8-12.fc38 copr_base 54 k coreutils ppc64le 9.1-8.fc38 copr_base 1.3 M cpio ppc64le 2.13-13.fc38 copr_base 277 k diffutils ppc64le 3.8-3.fc38 copr_base 381 k fedora-release-common noarch 38-0.6 fedora 21 k findutils ppc64le 1:4.9.0-2.fc38 copr_base 530 k gawk ppc64le 5.1.1-4.fc38 copr_base 1.0 M glibc-minimal-langpack ppc64le 2.36.9000-19.fc38 fedora 30 k grep ppc64le 3.8-1.fc38 copr_base 293 k gzip ppc64le 1.12-2.fc38 copr_base 163 k info ppc64le 7.0.1-1.fc38 fedora 199 k patch ppc64le 2.7.6-17.fc38 copr_base 136 k redhat-rpm-config noarch 235-1.fc38 copr_base 74 k rpm-build ppc64le 4.18.0-8.fc38 copr_base 71 k sed ppc64le 4.8-11.fc38 copr_base 304 k shadow-utils ppc64le 2:4.13-3.fc38 fedora 1.3 M tar ppc64le 2:1.34-5.fc38 fedora 914 k unzip ppc64le 6.0-58.fc38 fedora 188 k util-linux ppc64le 2.38.1-3.fc38 fedora 2.4 M which ppc64le 2.21-36.fc38 fedora 42 k xz ppc64le 5.2.9-1.fc38 fedora 310 k Installing dependencies: alternatives ppc64le 1.21-1.fc38 copr_base 41 k ansible-srpm-macros noarch 1-8.1.fc38 fedora 8.6 k audit-libs ppc64le 3.0.9-2.fc38 fedora 130 k authselect ppc64le 1.4.2-1.fc38 copr_base 141 k authselect-libs ppc64le 1.4.2-1.fc38 copr_base 241 k basesystem noarch 11-14.fc37 fedora 7.0 k binutils ppc64le 2.39-6.fc38 copr_base 6.2 M binutils-gold ppc64le 2.39-6.fc38 copr_base 1.1 M bzip2-libs ppc64le 1.0.8-12.fc38 copr_base 48 k ca-certificates noarch 2022.2.54-5.fc37 fedora 829 k coreutils-common ppc64le 9.1-8.fc38 copr_base 2.0 M cracklib ppc64le 2.9.7-30.fc38 copr_base 84 k crypto-policies noarch 20221215-1.gita4c31a3.fc38 fedora 90 k curl ppc64le 7.87.0-1.fc38 copr_base 348 k cyrus-sasl-lib ppc64le 2.1.28-8.fc38 copr_base 882 k debugedit ppc64le 5.0-5.fc37 fedora 80 k dwz ppc64le 0.15-1.fc38 copr_base 143 k ed ppc64le 1.18-2.fc38 copr_base 82 k efi-srpm-macros noarch 5-6.fc37 fedora 22 k elfutils ppc64le 0.188-3.fc38 copr_base 555 k elfutils-debuginfod-client ppc64le 0.188-3.fc38 copr_base 42 k elfutils-default-yama-scope noarch 0.188-3.fc38 copr_base 16 k elfutils-libelf ppc64le 0.188-3.fc38 copr_base 205 k elfutils-libs ppc64le 0.188-3.fc38 copr_base 291 k fedora-gpg-keys noarch 38-0.3 fedora 125 k fedora-release noarch 38-0.6 fedora 11 k fedora-release-identity-basic noarch 38-0.6 fedora 11 k fedora-repos noarch 38-0.3 fedora 10 k fedora-repos-rawhide noarch 38-0.3 fedora 9.7 k file ppc64le 5.42-4.fc38 copr_base 50 k file-libs ppc64le 5.42-4.fc38 copr_base 688 k filesystem ppc64le 3.18-2.fc37 fedora 1.1 M fonts-srpm-macros noarch 1:2.0.5-10.fc38 fedora 26 k fpc-srpm-macros noarch 1.3-6.fc37 fedora 7.7 k gdb-minimal ppc64le 12.1-10.fc38 fedora 3.7 M gdbm-libs ppc64le 1:1.23-2.fc38 copr_base 62 k ghc-srpm-macros noarch 1.5.0-7.fc37 fedora 7.8 k glibc ppc64le 2.36.9000-19.fc38 fedora 2.2 M glibc-common ppc64le 2.36.9000-19.fc38 fedora 322 k glibc-gconv-extra ppc64le 2.36.9000-19.fc38 fedora 1.9 M gmp ppc64le 1:6.2.1-3.fc38 copr_base 304 k gnat-srpm-macros noarch 4-16.fc37 fedora 8.3 k go-srpm-macros noarch 3.2.0-1.fc38 fedora 27 k jansson ppc64le 2.13.1-5.fc38 copr_base 50 k kernel-srpm-macros noarch 1.0-15.fc37 fedora 9.4 k keyutils-libs ppc64le 1.6.1-5.fc38 copr_base 33 k krb5-libs ppc64le 1.20.1-3.fc38 copr_base 805 k libacl ppc64le 2.3.1-4.fc38 copr_base 26 k libarchive ppc64le 3.6.1-3.fc38 copr_base 464 k libattr ppc64le 2.5.1-5.fc38 copr_base 19 k libblkid ppc64le 2.38.1-3.fc38 fedora 122 k libbrotli ppc64le 1.0.9-9.fc38 copr_base 345 k libcap ppc64le 2.48-5.fc38 copr_base 73 k libcap-ng ppc64le 0.8.3-4.fc38 copr_base 34 k libcom_err ppc64le 1.46.5-3.fc38 copr_base 26 k libcurl ppc64le 7.87.0-1.fc38 copr_base 334 k libdb ppc64le 5.3.28-54.fc38 copr_base 842 k libeconf ppc64le 0.4.0-4.fc38 copr_base 31 k libevent ppc64le 2.1.12-7.fc38 copr_base 276 k libfdisk ppc64le 2.38.1-3.fc38 fedora 176 k libffi ppc64le 3.4.4-1.fc38 copr_base 39 k libgcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 88 k libgomp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 314 k libidn2 ppc64le 2.3.4-1.fc38 copr_base 157 k libmount ppc64le 2.38.1-3.fc38 fedora 154 k libnghttp2 ppc64le 1.51.0-1.fc38 copr_base 85 k libnsl2 ppc64le 2.0.0-4.fc38 copr_base 33 k libpkgconf ppc64le 1.8.0-3.fc38 copr_base 40 k libpsl ppc64le 0.21.1-6.fc38 copr_base 67 k libpwquality ppc64le 1.4.5-1.fc38 fedora 122 k librtas ppc64le 2.0.3-1.fc38 copr_base 68 k libselinux ppc64le 3.5-0.rc1.1.fc38 fedora 99 k libsemanage ppc64le 3.5-0.rc1.1.fc38 fedora 131 k libsepol ppc64le 3.5-0.rc1.1.fc38 fedora 356 k libsigsegv ppc64le 2.14-3.fc38 copr_base 28 k libsmartcols ppc64le 2.38.1-3.fc38 fedora 70 k libssh ppc64le 0.10.4-2.fc38 copr_base 236 k libssh-config noarch 0.10.4-2.fc38 copr_base 9.2 k libstdc++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 932 k libtasn1 ppc64le 4.19.0-1.fc38 copr_base 81 k libtirpc ppc64le 1.3.3-0.fc38 copr_base 108 k libunistring ppc64le 1.0-2.fc38 copr_base 575 k libutempter ppc64le 1.2.1-7.fc38 copr_base 27 k libuuid ppc64le 2.38.1-3.fc38 fedora 29 k libverto ppc64le 0.3.2-4.fc38 copr_base 23 k libxcrypt ppc64le 4.4.33-5.fc38 copr_base 133 k libxml2 ppc64le 2.10.3-2.fc38 copr_base 780 k libzstd ppc64le 1.5.2-3.fc37 fedora 316 k lua-libs ppc64le 5.4.4-6.fc38 copr_base 149 k lua-srpm-macros noarch 1-7.fc37 fedora 8.8 k lz4-libs ppc64le 1.9.3-5.fc38 copr_base 90 k mpfr ppc64le 4.1.1-2.fc38 copr_base 609 k ncurses-base noarch 6.3-5.20221126.fc38 copr_base 62 k ncurses-libs ppc64le 6.3-5.20221126.fc38 copr_base 374 k nettle ppc64le 3.8-2.fc38 copr_base 443 k nim-srpm-macros noarch 3-7.fc37 fedora 8.4 k ocaml-srpm-macros noarch 7-2.fc37 fedora 13 k openblas-srpm-macros noarch 2-12.fc37 fedora 7.5 k openldap ppc64le 2.6.3-1.fc38 copr_base 288 k openssl-libs ppc64le 1:3.0.5-6.fc38 copr_base 2.2 M p11-kit ppc64le 0.24.1-5.fc38 copr_base 359 k p11-kit-trust ppc64le 0.24.1-5.fc38 copr_base 150 k package-notes-srpm-macros noarch 0.5-6.fc38 fedora 11 k pam ppc64le 1.5.2-15.fc38 copr_base 569 k pam-libs ppc64le 1.5.2-15.fc38 copr_base 64 k pcre2 ppc64le 10.40-1.fc38.1 copr_base 242 k pcre2-syntax noarch 10.40-1.fc38.1 copr_base 143 k perl-srpm-macros noarch 1-47.fc38 fedora 8.2 k pkgconf ppc64le 1.8.0-3.fc38 copr_base 43 k pkgconf-m4 noarch 1.8.0-3.fc38 copr_base 15 k pkgconf-pkg-config ppc64le 1.8.0-3.fc38 copr_base 11 k popt ppc64le 1.19-1.fc38 copr_base 64 k publicsuffix-list-dafsa noarch 20221208-1.fc38 fedora 59 k python-srpm-macros noarch 3.11-6.fc38 fedora 25 k qt5-srpm-macros noarch 5.15.7-1.fc38 copr_base 8.4 k readline ppc64le 8.2-2.fc38 copr_base 229 k rpm ppc64le 4.18.0-8.fc38 copr_base 538 k rpm-build-libs ppc64le 4.18.0-8.fc38 copr_base 103 k rpm-libs ppc64le 4.18.0-8.fc38 copr_base 355 k rpm-sequoia ppc64le 1.2.0-1.fc38 copr_base 1.4 M rpmautospec-rpm-macros noarch 0.3.1-1.fc38 copr_base 9.3 k rust-srpm-macros noarch 23-1.fc38 fedora 9.4 k setup noarch 2.14.3-1.fc38 fedora 152 k sqlite-libs ppc64le 3.40.0-1.fc38 fedora 776 k systemd-libs ppc64le 252.4-598.fc38 fedora 666 k tzdata noarch 2022g-1.fc38 fedora 716 k util-linux-core ppc64le 2.38.1-3.fc38 fedora 515 k xxhash-libs ppc64le 0.8.1-3.fc37 fedora 38 k xz-libs ppc64le 5.2.9-1.fc38 fedora 104 k zip ppc64le 3.0-35.fc38 fedora 267 k zlib ppc64le 1.2.13-1.fc38 fedora 100 k zstd ppc64le 1.5.2-3.fc37 fedora 466 k Installing Groups: Buildsystem building group Transaction Summary ========================================================================================================================== Install 154 Packages Total size: 57 M Total download size: 304 k Installed size: 328 M Downloading Packages: [SKIPPED] alternatives-1.21-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] authselect-1.4.2-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] authselect-libs-1.4.2-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] bash-5.2.9-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] binutils-2.39-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] binutils-gold-2.39-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] bzip2-1.0.8-12.fc38.ppc64le.rpm: Already downloaded [SKIPPED] bzip2-libs-1.0.8-12.fc38.ppc64le.rpm: Already downloaded [SKIPPED] coreutils-9.1-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] coreutils-common-9.1-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cpio-2.13-13.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cracklib-2.9.7-30.fc38.ppc64le.rpm: Already downloaded [SKIPPED] curl-7.87.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cyrus-sasl-lib-2.1.28-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] diffutils-3.8-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] dwz-0.15-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ed-1.18-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-debuginfod-client-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-default-yama-scope-0.188-3.fc38.noarch.rpm: Already downloaded [SKIPPED] elfutils-libelf-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] elfutils-libs-0.188-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] file-5.42-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] file-libs-5.42-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] findutils-4.9.0-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gawk-5.1.1-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gdbm-libs-1.23-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gmp-6.2.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] grep-3.8-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gzip-1.12-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] jansson-2.13.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] keyutils-libs-1.6.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] krb5-libs-1.20.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libacl-2.3.1-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libarchive-3.6.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libattr-2.5.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libbrotli-1.0.9-9.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcap-2.48-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcap-ng-0.8.3-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcom_err-1.46.5-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libcurl-7.87.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libdb-5.3.28-54.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libeconf-0.4.0-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libevent-2.1.12-7.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libffi-3.4.4-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libidn2-2.3.4-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libnghttp2-1.51.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libnsl2-2.0.0-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libpkgconf-1.8.0-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libpsl-0.21.1-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] librtas-2.0.3-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsigsegv-2.14-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libssh-0.10.4-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libssh-config-0.10.4-2.fc38.noarch.rpm: Already downloaded [SKIPPED] libtasn1-4.19.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libtirpc-1.3.3-0.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libunistring-1.0-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libutempter-1.2.1-7.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libverto-0.3.2-4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libxcrypt-4.4.33-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libxml2-2.10.3-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] lua-libs-5.4.4-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] lz4-libs-1.9.3-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] mpfr-4.1.1-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ncurses-base-6.3-5.20221126.fc38.noarch.rpm: Already downloaded [SKIPPED] ncurses-libs-6.3-5.20221126.fc38.ppc64le.rpm: Already downloaded [SKIPPED] nettle-3.8-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] openldap-2.6.3-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] openssl-libs-3.0.5-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] p11-kit-0.24.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] p11-kit-trust-0.24.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] pam-1.5.2-15.fc38.ppc64le.rpm: Already downloaded [SKIPPED] pam-libs-1.5.2-15.fc38.ppc64le.rpm: Already downloaded [SKIPPED] patch-2.7.6-17.fc38.ppc64le.rpm: Already downloaded [SKIPPED] pcre2-10.40-1.fc38.1.ppc64le.rpm: Already downloaded [SKIPPED] pcre2-syntax-10.40-1.fc38.1.noarch.rpm: Already downloaded [SKIPPED] pkgconf-1.8.0-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] pkgconf-m4-1.8.0-3.fc38.noarch.rpm: Already downloaded [SKIPPED] pkgconf-pkg-config-1.8.0-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] popt-1.19-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] qt5-srpm-macros-5.15.7-1.fc38.noarch.rpm: Already downloaded [SKIPPED] readline-8.2-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] redhat-rpm-config-235-1.fc38.noarch.rpm: Already downloaded [SKIPPED] rpm-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-build-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-build-libs-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-libs-4.18.0-8.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpm-sequoia-1.2.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] rpmautospec-rpm-macros-0.3.1-1.fc38.noarch.rpm: Already downloaded [SKIPPED] libgcc-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libgomp-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libstdc++-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ansible-srpm-macros-1-8.1.fc38.noarch.rpm: Already downloaded [SKIPPED] audit-libs-3.0.9-2.fc38.ppc64le.rpm: Already downloaded [SKIPPED] basesystem-11-14.fc37.noarch.rpm: Already downloaded [SKIPPED] ca-certificates-2022.2.54-5.fc37.noarch.rpm: Already downloaded [SKIPPED] crypto-policies-20221215-1.gita4c31a3.fc38.noarch.rpm: Already downloaded [SKIPPED] debugedit-5.0-5.fc37.ppc64le.rpm: Already downloaded [SKIPPED] efi-srpm-macros-5-6.fc37.noarch.rpm: Already downloaded [SKIPPED] fedora-gpg-keys-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-release-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-common-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-release-identity-basic-38-0.6.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-38-0.3.noarch.rpm: Already downloaded [SKIPPED] fedora-repos-rawhide-38-0.3.noarch.rpm: Already downloaded [SKIPPED] filesystem-3.18-2.fc37.ppc64le.rpm: Already downloaded [SKIPPED] fonts-srpm-macros-2.0.5-10.fc38.noarch.rpm: Already downloaded [SKIPPED] fpc-srpm-macros-1.3-6.fc37.noarch.rpm: Already downloaded [SKIPPED] gdb-minimal-12.1-10.fc38.ppc64le.rpm: Already downloaded [SKIPPED] ghc-srpm-macros-1.5.0-7.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded [SKIPPED] glibc-common-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded [SKIPPED] glibc-gconv-extra-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded [SKIPPED] glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gnat-srpm-macros-4-16.fc37.noarch.rpm: Already downloaded [SKIPPED] go-srpm-macros-3.2.0-1.fc38.noarch.rpm: Already downloaded [SKIPPED] info-7.0.1-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] kernel-srpm-macros-1.0-15.fc37.noarch.rpm: Already downloaded [SKIPPED] libblkid-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libfdisk-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libmount-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libpwquality-1.4.5-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libselinux-3.5-0.rc1.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsemanage-3.5-0.rc1.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsepol-3.5-0.rc1.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsmartcols-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libuuid-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libzstd-1.5.2-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] lua-srpm-macros-1-7.fc37.noarch.rpm: Already downloaded [SKIPPED] nim-srpm-macros-3-7.fc37.noarch.rpm: Already downloaded [SKIPPED] ocaml-srpm-macros-7-2.fc37.noarch.rpm: Already downloaded [SKIPPED] openblas-srpm-macros-2-12.fc37.noarch.rpm: Already downloaded [SKIPPED] package-notes-srpm-macros-0.5-6.fc38.noarch.rpm: Already downloaded [SKIPPED] perl-srpm-macros-1-47.fc38.noarch.rpm: Already downloaded [SKIPPED] publicsuffix-list-dafsa-20221208-1.fc38.noarch.rpm: Already downloaded [SKIPPED] python-srpm-macros-3.11-6.fc38.noarch.rpm: Already downloaded [SKIPPED] rust-srpm-macros-23-1.fc38.noarch.rpm: Already downloaded [SKIPPED] setup-2.14.3-1.fc38.noarch.rpm: Already downloaded [SKIPPED] shadow-utils-4.13-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] sqlite-libs-3.40.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] systemd-libs-252.4-598.fc38.ppc64le.rpm: Already downloaded [SKIPPED] tar-1.34-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] tzdata-2022g-1.fc38.noarch.rpm: Already downloaded [SKIPPED] unzip-6.0-58.fc38.ppc64le.rpm: Already downloaded [SKIPPED] util-linux-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] util-linux-core-2.38.1-3.fc38.ppc64le.rpm: Already downloaded [SKIPPED] which-2.21-36.fc38.ppc64le.rpm: Already downloaded [SKIPPED] xxhash-libs-0.8.1-3.fc37.ppc64le.rpm: Already downloaded [SKIPPED] xz-5.2.9-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] xz-libs-5.2.9-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zip-3.0-35.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zlib-1.2.13-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] zstd-1.5.2-3.fc37.ppc64le.rpm: Already downloaded (154/154): sed-4.8-11.fc38.ppc64le.rpm 962 kB/s | 304 kB 00:00 -------------------------------------------------------------------------------- Total 547 kB/s | 304 kB 00:00 fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0xEB10B464: Userid : "Fedora (38) " Fingerprint: 6A51 BBAB BA3D 5467 B617 1221 809A 8D7C EB10 B464 From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary Key imported successfully fedora 1.6 MB/s | 1.6 kB 00:00 GPG key at file:///usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-38-primary (0xEB10B464) is already installed fedora 1.6 MB/s | 1.6 kB 00:00 Importing GPG key 0x5323552A: Userid : "Fedora (37) " Fingerprint: ACB5 EE4E 831C 74BB 7C16 8D27 F55A D3FB 5323 552A From : /usr/share/distribution-gpg-keys/fedora/RPM-GPG-KEY-fedora-37-primary Key imported successfully Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: filesystem-3.18-2.fc37.ppc64le 1/1 Preparing : 1/1 Installing : libgcc-13.0.0-0.4.fc38.ppc64le 1/154 Running scriptlet: libgcc-13.0.0-0.4.fc38.ppc64le 1/154 Installing : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/154 Running scriptlet: crypto-policies-20221215-1.gita4c31a3.fc38.noarc 2/154 Installing : fedora-release-identity-basic-38-0.6.noarch 3/154 Installing : tzdata-2022g-1.fc38.noarch 4/154 Installing : rust-srpm-macros-23-1.fc38.noarch 5/154 Installing : publicsuffix-list-dafsa-20221208-1.fc38.noarch 6/154 Installing : perl-srpm-macros-1-47.fc38.noarch 7/154 Installing : package-notes-srpm-macros-0.5-6.fc38.noarch 8/154 Installing : openblas-srpm-macros-2-12.fc37.noarch 9/154 Installing : ocaml-srpm-macros-7-2.fc37.noarch 10/154 Installing : nim-srpm-macros-3-7.fc37.noarch 11/154 Installing : kernel-srpm-macros-1.0-15.fc37.noarch 12/154 Installing : gnat-srpm-macros-4-16.fc37.noarch 13/154 Installing : 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Verifying : nettle-3.8-2.fc38.ppc64le 67/154 Verifying : openldap-2.6.3-1.fc38.ppc64le 68/154 Verifying : openssl-libs-1:3.0.5-6.fc38.ppc64le 69/154 Verifying : p11-kit-0.24.1-5.fc38.ppc64le 70/154 Verifying : p11-kit-trust-0.24.1-5.fc38.ppc64le 71/154 Verifying : pam-1.5.2-15.fc38.ppc64le 72/154 Verifying : pam-libs-1.5.2-15.fc38.ppc64le 73/154 Verifying : patch-2.7.6-17.fc38.ppc64le 74/154 Verifying : pcre2-10.40-1.fc38.1.ppc64le 75/154 Verifying : pcre2-syntax-10.40-1.fc38.1.noarch 76/154 Verifying : pkgconf-1.8.0-3.fc38.ppc64le 77/154 Verifying : pkgconf-m4-1.8.0-3.fc38.noarch 78/154 Verifying : pkgconf-pkg-config-1.8.0-3.fc38.ppc64le 79/154 Verifying : popt-1.19-1.fc38.ppc64le 80/154 Verifying : qt5-srpm-macros-5.15.7-1.fc38.noarch 81/154 Verifying : readline-8.2-2.fc38.ppc64le 82/154 Verifying : redhat-rpm-config-235-1.fc38.noarch 83/154 Verifying : rpm-4.18.0-8.fc38.ppc64le 84/154 Verifying : rpm-build-4.18.0-8.fc38.ppc64le 85/154 Verifying : rpm-build-libs-4.18.0-8.fc38.ppc64le 86/154 Verifying : rpm-libs-4.18.0-8.fc38.ppc64le 87/154 Verifying : rpm-sequoia-1.2.0-1.fc38.ppc64le 88/154 Verifying : rpmautospec-rpm-macros-0.3.1-1.fc38.noarch 89/154 Verifying : sed-4.8-11.fc38.ppc64le 90/154 Verifying : libgcc-13.0.0-0.4.fc38.ppc64le 91/154 Verifying : libgomp-13.0.0-0.4.fc38.ppc64le 92/154 Verifying : libstdc++-13.0.0-0.4.fc38.ppc64le 93/154 Verifying : ansible-srpm-macros-1-8.1.fc38.noarch 94/154 Verifying : audit-libs-3.0.9-2.fc38.ppc64le 95/154 Verifying : basesystem-11-14.fc37.noarch 96/154 Verifying : ca-certificates-2022.2.54-5.fc37.noarch 97/154 Verifying : crypto-policies-20221215-1.gita4c31a3.fc38.noarc 98/154 Verifying : debugedit-5.0-5.fc37.ppc64le 99/154 Verifying : efi-srpm-macros-5-6.fc37.noarch 100/154 Verifying : fedora-gpg-keys-38-0.3.noarch 101/154 Verifying : fedora-release-38-0.6.noarch 102/154 Verifying : fedora-release-common-38-0.6.noarch 103/154 Verifying : fedora-release-identity-basic-38-0.6.noarch 104/154 Verifying : fedora-repos-38-0.3.noarch 105/154 Verifying : fedora-repos-rawhide-38-0.3.noarch 106/154 Verifying : filesystem-3.18-2.fc37.ppc64le 107/154 Verifying : fonts-srpm-macros-1:2.0.5-10.fc38.noarch 108/154 Verifying : fpc-srpm-macros-1.3-6.fc37.noarch 109/154 Verifying : gdb-minimal-12.1-10.fc38.ppc64le 110/154 Verifying : ghc-srpm-macros-1.5.0-7.fc37.noarch 111/154 Verifying : glibc-2.36.9000-19.fc38.ppc64le 112/154 Verifying : glibc-common-2.36.9000-19.fc38.ppc64le 113/154 Verifying : glibc-gconv-extra-2.36.9000-19.fc38.ppc64le 114/154 Verifying : glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le 115/154 Verifying : gnat-srpm-macros-4-16.fc37.noarch 116/154 Verifying : go-srpm-macros-3.2.0-1.fc38.noarch 117/154 Verifying : info-7.0.1-1.fc38.ppc64le 118/154 Verifying : kernel-srpm-macros-1.0-15.fc37.noarch 119/154 Verifying : libblkid-2.38.1-3.fc38.ppc64le 120/154 Verifying : libfdisk-2.38.1-3.fc38.ppc64le 121/154 Verifying : libmount-2.38.1-3.fc38.ppc64le 122/154 Verifying : libpwquality-1.4.5-1.fc38.ppc64le 123/154 Verifying : libselinux-3.5-0.rc1.1.fc38.ppc64le 124/154 Verifying : libsemanage-3.5-0.rc1.1.fc38.ppc64le 125/154 Verifying : libsepol-3.5-0.rc1.1.fc38.ppc64le 126/154 Verifying : libsmartcols-2.38.1-3.fc38.ppc64le 127/154 Verifying : libuuid-2.38.1-3.fc38.ppc64le 128/154 Verifying : libzstd-1.5.2-3.fc37.ppc64le 129/154 Verifying : lua-srpm-macros-1-7.fc37.noarch 130/154 Verifying : nim-srpm-macros-3-7.fc37.noarch 131/154 Verifying : ocaml-srpm-macros-7-2.fc37.noarch 132/154 Verifying : openblas-srpm-macros-2-12.fc37.noarch 133/154 Verifying : package-notes-srpm-macros-0.5-6.fc38.noarch 134/154 Verifying : perl-srpm-macros-1-47.fc38.noarch 135/154 Verifying : publicsuffix-list-dafsa-20221208-1.fc38.noarch 136/154 Verifying : python-srpm-macros-3.11-6.fc38.noarch 137/154 Verifying : rust-srpm-macros-23-1.fc38.noarch 138/154 Verifying : setup-2.14.3-1.fc38.noarch 139/154 Verifying : shadow-utils-2:4.13-3.fc38.ppc64le 140/154 Verifying : sqlite-libs-3.40.0-1.fc38.ppc64le 141/154 Verifying : systemd-libs-252.4-598.fc38.ppc64le 142/154 Verifying : tar-2:1.34-5.fc38.ppc64le 143/154 Verifying : tzdata-2022g-1.fc38.noarch 144/154 Verifying : unzip-6.0-58.fc38.ppc64le 145/154 Verifying : util-linux-2.38.1-3.fc38.ppc64le 146/154 Verifying : util-linux-core-2.38.1-3.fc38.ppc64le 147/154 Verifying : which-2.21-36.fc38.ppc64le 148/154 Verifying : xxhash-libs-0.8.1-3.fc37.ppc64le 149/154 Verifying : xz-5.2.9-1.fc38.ppc64le 150/154 Verifying : xz-libs-5.2.9-1.fc38.ppc64le 151/154 Verifying : zip-3.0-35.fc38.ppc64le 152/154 Verifying : zlib-1.2.13-1.fc38.ppc64le 153/154 Verifying : zstd-1.5.2-3.fc37.ppc64le 154/154 Installed: alternatives-1.21-1.fc38.ppc64le ansible-srpm-macros-1-8.1.fc38.noarch audit-libs-3.0.9-2.fc38.ppc64le authselect-1.4.2-1.fc38.ppc64le authselect-libs-1.4.2-1.fc38.ppc64le basesystem-11-14.fc37.noarch bash-5.2.9-3.fc38.ppc64le binutils-2.39-6.fc38.ppc64le binutils-gold-2.39-6.fc38.ppc64le bzip2-1.0.8-12.fc38.ppc64le bzip2-libs-1.0.8-12.fc38.ppc64le ca-certificates-2022.2.54-5.fc37.noarch coreutils-9.1-8.fc38.ppc64le coreutils-common-9.1-8.fc38.ppc64le cpio-2.13-13.fc38.ppc64le cracklib-2.9.7-30.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch curl-7.87.0-1.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le debugedit-5.0-5.fc37.ppc64le diffutils-3.8-3.fc38.ppc64le dwz-0.15-1.fc38.ppc64le ed-1.18-2.fc38.ppc64le efi-srpm-macros-5-6.fc37.noarch elfutils-0.188-3.fc38.ppc64le elfutils-debuginfod-client-0.188-3.fc38.ppc64le elfutils-default-yama-scope-0.188-3.fc38.noarch elfutils-libelf-0.188-3.fc38.ppc64le elfutils-libs-0.188-3.fc38.ppc64le fedora-gpg-keys-38-0.3.noarch fedora-release-38-0.6.noarch fedora-release-common-38-0.6.noarch fedora-release-identity-basic-38-0.6.noarch fedora-repos-38-0.3.noarch fedora-repos-rawhide-38-0.3.noarch file-5.42-4.fc38.ppc64le file-libs-5.42-4.fc38.ppc64le filesystem-3.18-2.fc37.ppc64le findutils-1:4.9.0-2.fc38.ppc64le fonts-srpm-macros-1:2.0.5-10.fc38.noarch fpc-srpm-macros-1.3-6.fc37.noarch gawk-5.1.1-4.fc38.ppc64le gdb-minimal-12.1-10.fc38.ppc64le gdbm-libs-1:1.23-2.fc38.ppc64le ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-2.36.9000-19.fc38.ppc64le glibc-common-2.36.9000-19.fc38.ppc64le glibc-gconv-extra-2.36.9000-19.fc38.ppc64le glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le gmp-1:6.2.1-3.fc38.ppc64le gnat-srpm-macros-4-16.fc37.noarch go-srpm-macros-3.2.0-1.fc38.noarch grep-3.8-1.fc38.ppc64le gzip-1.12-2.fc38.ppc64le info-7.0.1-1.fc38.ppc64le jansson-2.13.1-5.fc38.ppc64le kernel-srpm-macros-1.0-15.fc37.noarch keyutils-libs-1.6.1-5.fc38.ppc64le krb5-libs-1.20.1-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le libattr-2.5.1-5.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le libbrotli-1.0.9-9.fc38.ppc64le libcap-2.48-5.fc38.ppc64le libcap-ng-0.8.3-4.fc38.ppc64le libcom_err-1.46.5-3.fc38.ppc64le libcurl-7.87.0-1.fc38.ppc64le libdb-5.3.28-54.fc38.ppc64le libeconf-0.4.0-4.fc38.ppc64le libevent-2.1.12-7.fc38.ppc64le libfdisk-2.38.1-3.fc38.ppc64le libffi-3.4.4-1.fc38.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le libidn2-2.3.4-1.fc38.ppc64le libmount-2.38.1-3.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le libnsl2-2.0.0-4.fc38.ppc64le libpkgconf-1.8.0-3.fc38.ppc64le libpsl-0.21.1-6.fc38.ppc64le libpwquality-1.4.5-1.fc38.ppc64le librtas-2.0.3-1.fc38.ppc64le libselinux-3.5-0.rc1.1.fc38.ppc64le libsemanage-3.5-0.rc1.1.fc38.ppc64le libsepol-3.5-0.rc1.1.fc38.ppc64le libsigsegv-2.14-3.fc38.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le libssh-0.10.4-2.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch libstdc++-13.0.0-0.4.fc38.ppc64le libtasn1-4.19.0-1.fc38.ppc64le libtirpc-1.3.3-0.fc38.ppc64le libunistring-1.0-2.fc38.ppc64le libutempter-1.2.1-7.fc38.ppc64le libuuid-2.38.1-3.fc38.ppc64le libverto-0.3.2-4.fc38.ppc64le libxcrypt-4.4.33-5.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le libzstd-1.5.2-3.fc37.ppc64le lua-libs-5.4.4-6.fc38.ppc64le lua-srpm-macros-1-7.fc37.noarch lz4-libs-1.9.3-5.fc38.ppc64le mpfr-4.1.1-2.fc38.ppc64le ncurses-base-6.3-5.20221126.fc38.noarch ncurses-libs-6.3-5.20221126.fc38.ppc64le nettle-3.8-2.fc38.ppc64le nim-srpm-macros-3-7.fc37.noarch ocaml-srpm-macros-7-2.fc37.noarch openblas-srpm-macros-2-12.fc37.noarch openldap-2.6.3-1.fc38.ppc64le openssl-libs-1:3.0.5-6.fc38.ppc64le p11-kit-0.24.1-5.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le package-notes-srpm-macros-0.5-6.fc38.noarch pam-1.5.2-15.fc38.ppc64le pam-libs-1.5.2-15.fc38.ppc64le patch-2.7.6-17.fc38.ppc64le pcre2-10.40-1.fc38.1.ppc64le pcre2-syntax-10.40-1.fc38.1.noarch perl-srpm-macros-1-47.fc38.noarch pkgconf-1.8.0-3.fc38.ppc64le pkgconf-m4-1.8.0-3.fc38.noarch pkgconf-pkg-config-1.8.0-3.fc38.ppc64le popt-1.19-1.fc38.ppc64le publicsuffix-list-dafsa-20221208-1.fc38.noarch python-srpm-macros-3.11-6.fc38.noarch qt5-srpm-macros-5.15.7-1.fc38.noarch readline-8.2-2.fc38.ppc64le redhat-rpm-config-235-1.fc38.noarch rpm-4.18.0-8.fc38.ppc64le rpm-build-4.18.0-8.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le rpmautospec-rpm-macros-0.3.1-1.fc38.noarch rust-srpm-macros-23-1.fc38.noarch sed-4.8-11.fc38.ppc64le setup-2.14.3-1.fc38.noarch shadow-utils-2:4.13-3.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le systemd-libs-252.4-598.fc38.ppc64le tar-2:1.34-5.fc38.ppc64le tzdata-2022g-1.fc38.noarch unzip-6.0-58.fc38.ppc64le util-linux-2.38.1-3.fc38.ppc64le util-linux-core-2.38.1-3.fc38.ppc64le which-2.21-36.fc38.ppc64le xxhash-libs-0.8.1-3.fc37.ppc64le xz-5.2.9-1.fc38.ppc64le xz-libs-5.2.9-1.fc38.ppc64le zip-3.0-35.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le zstd-1.5.2-3.fc37.ppc64le Complete! Finish: dnf install Start: creating root cache Finish: creating root cache Finish: chroot init INFO: Installed packages: INFO: redhat-rpm-config-235-1.fc38.noarch krb5-libs-1.20.1-3.fc38.ppc64le glibc-gconv-extra-2.36.9000-19.fc38.ppc64le elfutils-libelf-0.188-3.fc38.ppc64le rust-srpm-macros-23-1.fc38.noarch libfdisk-2.38.1-3.fc38.ppc64le xz-5.2.9-1.fc38.ppc64le qt5-srpm-macros-5.15.7-1.fc38.noarch coreutils-common-9.1-8.fc38.ppc64le libgcc-13.0.0-0.4.fc38.ppc64le libblkid-2.38.1-3.fc38.ppc64le popt-1.19-1.fc38.ppc64le glibc-common-2.36.9000-19.fc38.ppc64le coreutils-9.1-8.fc38.ppc64le libunistring-1.0-2.fc38.ppc64le lua-libs-5.4.4-6.fc38.ppc64le go-srpm-macros-3.2.0-1.fc38.noarch efi-srpm-macros-5-6.fc37.noarch package-notes-srpm-macros-0.5-6.fc38.noarch basesystem-11-14.fc37.noarch libidn2-2.3.4-1.fc38.ppc64le libsmartcols-2.38.1-3.fc38.ppc64le patch-2.7.6-17.fc38.ppc64le libverto-0.3.2-4.fc38.ppc64le alternatives-1.21-1.fc38.ppc64le rpm-libs-4.18.0-8.fc38.ppc64le rpm-build-4.18.0-8.fc38.ppc64le zlib-1.2.13-1.fc38.ppc64le pkgconf-m4-1.8.0-3.fc38.noarch gnat-srpm-macros-4-16.fc37.noarch readline-8.2-2.fc38.ppc64le fedora-release-common-38-0.6.noarch libcom_err-1.46.5-3.fc38.ppc64le crypto-policies-20221215-1.gita4c31a3.fc38.noarch openblas-srpm-macros-2-12.fc37.noarch libcap-ng-0.8.3-4.fc38.ppc64le fpc-srpm-macros-1.3-6.fc37.noarch sed-4.8-11.fc38.ppc64le info-7.0.1-1.fc38.ppc64le tzdata-2022g-1.fc38.noarch elfutils-default-yama-scope-0.188-3.fc38.noarch publicsuffix-list-dafsa-20221208-1.fc38.noarch glibc-2.36.9000-19.fc38.ppc64le gdb-minimal-12.1-10.fc38.ppc64le rpm-build-libs-4.18.0-8.fc38.ppc64le util-linux-2.38.1-3.fc38.ppc64le audit-libs-3.0.9-2.fc38.ppc64le lua-srpm-macros-1-7.fc37.noarch findutils-4.9.0-2.fc38.ppc64le sqlite-libs-3.40.0-1.fc38.ppc64le mpfr-4.1.1-2.fc38.ppc64le tar-1.34-5.fc38.ppc64le jansson-2.13.1-5.fc38.ppc64le unzip-6.0-58.fc38.ppc64le rpm-sequoia-1.2.0-1.fc38.ppc64le fedora-release-identity-basic-38-0.6.noarch pam-1.5.2-15.fc38.ppc64le ghc-srpm-macros-1.5.0-7.fc37.noarch glibc-minimal-langpack-2.36.9000-19.fc38.ppc64le libstdc++-13.0.0-0.4.fc38.ppc64le gdbm-libs-1.23-2.fc38.ppc64le fedora-repos-38-0.3.noarch filesystem-3.18-2.fc37.ppc64le libutempter-1.2.1-7.fc38.ppc64le libxml2-2.10.3-2.fc38.ppc64le openldap-2.6.3-1.fc38.ppc64le fedora-gpg-keys-38-0.3.noarch libxcrypt-4.4.33-5.fc38.ppc64le bash-5.2.9-3.fc38.ppc64le zip-3.0-35.fc38.ppc64le elfutils-debuginfod-client-0.188-3.fc38.ppc64le rpm-4.18.0-8.fc38.ppc64le libffi-3.4.4-1.fc38.ppc64le nettle-3.8-2.fc38.ppc64le dwz-0.15-1.fc38.ppc64le ed-1.18-2.fc38.ppc64le ncurses-libs-6.3-5.20221126.fc38.ppc64le pcre2-syntax-10.40-1.fc38.1.noarch ocaml-srpm-macros-7-2.fc37.noarch libpsl-0.21.1-6.fc38.ppc64le python-srpm-macros-3.11-6.fc38.noarch libtasn1-4.19.0-1.fc38.ppc64le libtirpc-1.3.3-0.fc38.ppc64le pkgconf-1.8.0-3.fc38.ppc64le binutils-2.39-6.fc38.ppc64le shadow-utils-4.13-3.fc38.ppc64le setup-2.14.3-1.fc38.noarch ncurses-base-6.3-5.20221126.fc38.noarch pam-libs-1.5.2-15.fc38.ppc64le gmp-6.2.1-3.fc38.ppc64le ansible-srpm-macros-1-8.1.fc38.noarch p11-kit-0.24.1-5.fc38.ppc64le libattr-2.5.1-5.fc38.ppc64le which-2.21-36.fc38.ppc64le cracklib-2.9.7-30.fc38.ppc64le cpio-2.13-13.fc38.ppc64le rpmautospec-rpm-macros-0.3.1-1.fc38.noarch lz4-libs-1.9.3-5.fc38.ppc64le xz-libs-5.2.9-1.fc38.ppc64le libnghttp2-1.51.0-1.fc38.ppc64le gpg-pubkey-5323552a-6112bcdc libeconf-0.4.0-4.fc38.ppc64le util-linux-core-2.38.1-3.fc38.ppc64le p11-kit-trust-0.24.1-5.fc38.ppc64le libmount-2.38.1-3.fc38.ppc64le gawk-5.1.1-4.fc38.ppc64le libsepol-3.5-0.rc1.1.fc38.ppc64le libcurl-7.87.0-1.fc38.ppc64le pcre2-10.40-1.fc38.1.ppc64le libssh-0.10.4-2.fc38.ppc64le libevent-2.1.12-7.fc38.ppc64le binutils-gold-2.39-6.fc38.ppc64le authselect-1.4.2-1.fc38.ppc64le file-libs-5.42-4.fc38.ppc64le fedora-repos-rawhide-38-0.3.noarch elfutils-libs-0.188-3.fc38.ppc64le libsigsegv-2.14-3.fc38.ppc64le xxhash-libs-0.8.1-3.fc37.ppc64le libnsl2-2.0.0-4.fc38.ppc64le elfutils-0.188-3.fc38.ppc64le cyrus-sasl-lib-2.1.28-8.fc38.ppc64le kernel-srpm-macros-1.0-15.fc37.noarch file-5.42-4.fc38.ppc64le libdb-5.3.28-54.fc38.ppc64le diffutils-3.8-3.fc38.ppc64le libpkgconf-1.8.0-3.fc38.ppc64le openssl-libs-3.0.5-6.fc38.ppc64le perl-srpm-macros-1-47.fc38.noarch librtas-2.0.3-1.fc38.ppc64le authselect-libs-1.4.2-1.fc38.ppc64le libselinux-3.5-0.rc1.1.fc38.ppc64le debugedit-5.0-5.fc37.ppc64le nim-srpm-macros-3-7.fc37.noarch systemd-libs-252.4-598.fc38.ppc64le ca-certificates-2022.2.54-5.fc37.noarch libuuid-2.38.1-3.fc38.ppc64le grep-3.8-1.fc38.ppc64le libbrotli-1.0.9-9.fc38.ppc64le bzip2-libs-1.0.8-12.fc38.ppc64le pkgconf-pkg-config-1.8.0-3.fc38.ppc64le libacl-2.3.1-4.fc38.ppc64le libsemanage-3.5-0.rc1.1.fc38.ppc64le libzstd-1.5.2-3.fc37.ppc64le keyutils-libs-1.6.1-5.fc38.ppc64le zstd-1.5.2-3.fc37.ppc64le gpg-pubkey-eb10b464-6202d9c6 libpwquality-1.4.5-1.fc38.ppc64le gzip-1.12-2.fc38.ppc64le curl-7.87.0-1.fc38.ppc64le fonts-srpm-macros-2.0.5-10.fc38.noarch bzip2-1.0.8-12.fc38.ppc64le libgomp-13.0.0-0.4.fc38.ppc64le libarchive-3.6.1-3.fc38.ppc64le libcap-2.48-5.fc38.ppc64le libssh-config-0.10.4-2.fc38.noarch fedora-release-38-0.6.noarch Start: buildsrpm Start: rpmbuild -bs Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/seqan-1.4.2-50.fc38.src.rpm Finish: rpmbuild -bs cp: ‘var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root/var/log’: No such file or directory INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root/var/log/dnf.log Finish: buildsrpm INFO: Done(/var/lib/copr-rpmbuild/workspace/workdir-ojc8c6i2/seqan/seqan.spec) Config(child) 1 minutes 54 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running (timeout=115200): unbuffer mock --rebuild /var/lib/copr-rpmbuild/results/seqan-1.4.2-50.fc38.src.rpm --resultdir /var/lib/copr-rpmbuild/results --uniqueext 1672302897.527342 -r /var/lib/copr-rpmbuild/results/configs/child.cfg INFO: mock.py version 3.5 starting (python version = 3.11.0, NVR = mock-3.5-1.fc37)... Start(bootstrap): init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish(bootstrap): init plugins Start: init plugins INFO: tmpfs initialized INFO: selinux enabled INFO: chroot_scan: initialized INFO: compress_logs: initialized Finish: init plugins INFO: Signal handler active Start: run INFO: Start(/var/lib/copr-rpmbuild/results/seqan-1.4.2-50.fc38.src.rpm) Config(fedora-rawhide-ppc64le) Start: clean chroot Finish: clean chroot Start(bootstrap): chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672302897.527342/root. INFO: reusing tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-bootstrap-1672302897.527342/root. INFO: calling preinit hooks INFO: enabled root cache INFO: enabled package manager cache Start(bootstrap): cleaning package manager metadata Finish(bootstrap): cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Finish(bootstrap): chroot init Start: chroot init INFO: mounting tmpfs at /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root. INFO: calling preinit hooks INFO: enabled root cache Start: unpacking root cache Finish: unpacking root cache INFO: enabled package manager cache Start: cleaning package manager metadata Finish: cleaning package manager metadata INFO: enabled HW Info plugin Mock Version: 3.5 INFO: Mock Version: 3.5 Start: dnf update No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 10 kB/s | 3.0 kB 00:00 Copr repository 29 MB/s | 38 MB 00:01 Additional repo https_jakub_fedorapeople_org_fe 7.1 kB/s | 3.0 kB 00:00 fedora 24 kB/s | 6.7 kB 00:00 Dependencies resolved. Nothing to do. Complete! Finish: dnf update Finish: chroot init Start: build phase for seqan-1.4.2-50.fc38.src.rpm Start: build setup for seqan-1.4.2-50.fc38.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1658534400 Wrote: /builddir/build/SRPMS/seqan-1.4.2-50.fc38.src.rpm No matches found for the following disable plugin patterns: local, spacewalk, versionlock Copr repository 10 kB/s | 3.0 kB 00:00 Additional repo https_jakub_fedorapeople_org_fe 8.6 kB/s | 3.0 kB 00:00 fedora 24 kB/s | 6.7 kB 00:00 Dependencies resolved. ============================================================================================================================== Package Arch Version Repository Size ============================================================================================================================== Installing: boost-devel ppc64le 1.78.0-9.fc38 copr_base 11 M bzip2-devel ppc64le 1.0.8-12.fc38 copr_base 214 k cmake ppc64le 3.25.1-1.fc38 copr_base 6.8 M coin-or-lemon-devel ppc64le 1.3.1-25.fc38 copr_base 287 k gcc ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 30 M gcc-c++ ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 12 M java-1.8.0-openjdk-devel ppc64le 1:1.8.0.352.b08-1.fc38 copr_base 7.4 M libstdc++-static ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 951 k llvm-devel ppc64le 15.0.6-2.fc38 copr_base 3.4 M make ppc64le 1:4.3-11.fc38 copr_base 549 k python3-devel ppc64le 3.11.1-1.fc38 copr_base 235 k python3-setuptools noarch 65.5.1-1.fc38 fedora 1.7 M qt-devel ppc64le 1:4.8.7-70.fc38 copr_base 9.8 M zlib-devel ppc64le 1.2.13-1.fc38 fedora 45 k Installing dependencies: Lmod ppc64le 8.7.14-1.fc38 copr_base 231 k MUMPS ppc64le 5.5.1-1.fc38 copr_base 2.0 M MUMPS-common noarch 5.5.1-1.fc38 copr_base 831 k alsa-lib ppc64le 1.2.8-2.fc38 copr_base 570 k annobin-docs noarch 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 93 k annobin-plugin-gcc ppc64le 10.99-1.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 890 k avahi-libs ppc64le 0.8-19.fc38 copr_base 72 k boost ppc64le 1.78.0-9.fc38 copr_base 15 k boost-atomic ppc64le 1.78.0-9.fc38 copr_base 20 k boost-chrono ppc64le 1.78.0-9.fc38 copr_base 28 k boost-container ppc64le 1.78.0-9.fc38 copr_base 43 k boost-context ppc64le 1.78.0-9.fc38 copr_base 18 k boost-contract ppc64le 1.78.0-9.fc38 copr_base 48 k boost-coroutine ppc64le 1.78.0-9.fc38 copr_base 24 k boost-date-time ppc64le 1.78.0-9.fc38 copr_base 17 k boost-fiber ppc64le 1.78.0-9.fc38 copr_base 45 k boost-filesystem ppc64le 1.78.0-9.fc38 copr_base 68 k boost-graph ppc64le 1.78.0-9.fc38 copr_base 160 k boost-iostreams ppc64le 1.78.0-9.fc38 copr_base 42 k boost-json ppc64le 1.78.0-9.fc38 copr_base 117 k boost-locale ppc64le 1.78.0-9.fc38 copr_base 245 k boost-log ppc64le 1.78.0-9.fc38 copr_base 524 k boost-math ppc64le 1.78.0-9.fc38 copr_base 295 k boost-nowide ppc64le 1.78.0-9.fc38 copr_base 22 k boost-numpy3 ppc64le 1.78.0-9.fc38 copr_base 30 k boost-program-options ppc64le 1.78.0-9.fc38 copr_base 117 k boost-python3 ppc64le 1.78.0-9.fc38 copr_base 119 k boost-random ppc64le 1.78.0-9.fc38 copr_base 27 k boost-regex ppc64le 1.78.0-9.fc38 copr_base 122 k boost-serialization ppc64le 1.78.0-9.fc38 copr_base 139 k boost-stacktrace ppc64le 1.78.0-9.fc38 copr_base 32 k boost-system ppc64le 1.78.0-9.fc38 copr_base 17 k boost-test ppc64le 1.78.0-9.fc38 copr_base 251 k boost-thread ppc64le 1.78.0-9.fc38 copr_base 63 k boost-timer ppc64le 1.78.0-9.fc38 copr_base 46 k boost-type_erasure ppc64le 1.78.0-9.fc38 copr_base 35 k boost-wave ppc64le 1.78.0-9.fc38 copr_base 239 k brotli ppc64le 1.0.9-9.fc38 copr_base 345 k brotli-devel ppc64le 1.0.9-9.fc38 copr_base 32 k byte-buddy noarch 1.12.10-2.fc38 fedora 2.9 M byte-buddy-agent noarch 1.12.10-2.fc38 fedora 65 k cairo ppc64le 1.17.6-2.fc38 copr_base 757 k cliquer-libs ppc64le 1.22-4.fc38 copr_base 42 k cmake-data noarch 3.25.1-1.fc38 copr_base 1.7 M cmake-filesystem ppc64le 3.25.1-1.fc38 copr_base 17 k cmake-rpm-macros noarch 3.25.1-1.fc38 copr_base 16 k coin-or-Cbc ppc64le 2.10.5-10.fc38 copr_base 850 k coin-or-Cgl ppc64le 0.60.3-8.fc38 copr_base 444 k coin-or-Clp ppc64le 1.17.6-10.fc38 copr_base 976 k coin-or-CoinUtils ppc64le 2.11.4-8.fc38 copr_base 523 k coin-or-Osi ppc64le 0.108.6-6.fc38 copr_base 324 k coin-or-lemon ppc64le 1.3.1-25.fc38 copr_base 85 k copy-jdk-configs noarch 4.1-1.fc38 fedora 28 k cpp ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 9.8 M crypto-policies-scripts noarch 20221215-1.gita4c31a3.fc38 fedora 116 k cups-libs ppc64le 1:2.4.2-5.fc38 copr_base 320 k dbus-libs ppc64le 1:1.14.4-1.fc38 copr_base 177 k emacs-filesystem noarch 1:28.1-3.fc37 fedora 9.5 k expat ppc64le 2.5.0-1.fc38 copr_base 117 k flexiblas ppc64le 3.2.1-3.fc38 fedora 32 k flexiblas-netlib ppc64le 3.2.1-3.fc38 fedora 2.7 M flexiblas-openblas-openmp ppc64le 3.2.1-3.fc38 fedora 16 k fontconfig ppc64le 2.14.1-2.fc38 copr_base 328 k fontconfig-devel ppc64le 2.14.1-2.fc38 copr_base 128 k fonts-filesystem noarch 1:2.0.5-10.fc38 fedora 8.0 k freetype ppc64le 2.12.1-3.fc38 copr_base 471 k freetype-devel ppc64le 2.12.1-3.fc38 copr_base 859 k gc ppc64le 8.2.2-1.fc38 copr_base 122 k gcc-plugin-annobin ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 32 k gecode ppc64le 6.2.0-10.fc38 copr_base 3.2 M gettext ppc64le 0.21.1-1.fc38 copr_base 1.0 M gettext-envsubst ppc64le 0.21.1-1.fc38 copr_base 38 k gettext-libs ppc64le 0.21.1-1.fc38 copr_base 367 k gettext-runtime ppc64le 0.21.1-1.fc38 copr_base 109 k gl-manpages noarch 1.1-25.20190306.fc37 fedora 1.2 M glib2 ppc64le 2.74.1-2.fc38 copr_base 2.8 M glib2-devel ppc64le 2.74.1-2.fc38 copr_base 540 k glibc-devel ppc64le 2.36.9000-19.fc38 fedora 546 k glpk ppc64le 5.0-5.fc38 copr_base 413 k glx-utils ppc64le 8.4.0-14.20210504git0f9e7d9.fc38 copr_base 44 k gnutls ppc64le 3.7.8-9.fc38 copr_base 1.1 M google-noto-fonts-common noarch 20201206^1.git0c78c8329-9.fc38 fedora 18 k google-noto-sans-vf-fonts noarch 20201206^1.git0c78c8329-9.fc38 fedora 729 k graphite2 ppc64le 1.3.14-10.fc38 copr_base 105 k graphite2-devel ppc64le 1.3.14-10.fc38 copr_base 21 k gsl ppc64le 2.7.1-2.fc38 copr_base 1.2 M guile22 ppc64le 2.2.7-6.fc38 copr_base 6.5 M harfbuzz ppc64le 6.0.0-1.fc38 copr_base 897 k harfbuzz-devel ppc64le 6.0.0-1.fc38 copr_base 367 k harfbuzz-icu ppc64le 6.0.0-1.fc38 copr_base 17 k jacop noarch 4.8-9.fc37 fedora 1.7 M java-1.8.0-openjdk ppc64le 1:1.8.0.352.b08-1.fc38 copr_base 532 k java-1.8.0-openjdk-headless ppc64le 1:1.8.0.352.b08-1.fc38 copr_base 33 M java-17-openjdk-headless ppc64le 1:17.0.6.0.1-0.3.ea.fc38 copr_base 45 M java-diff-utils noarch 4.12-1.fc37 fedora 78 k javapackages-filesystem noarch 6.1.0-5.fc38 fedora 13 k javapackages-tools noarch 6.1.0-5.fc38 fedora 37 k jbigkit-libs ppc64le 2.1-24.fc38 copr_base 57 k jline-builtins noarch 3.21.0-6.fc37 fedora 261 k jline-reader noarch 3.21.0-6.fc37 fedora 171 k jline-style noarch 3.21.0-6.fc37 fedora 35 k jline-terminal noarch 3.21.0-6.fc37 fedora 281 k jline-terminal-jna noarch 3.21.0-6.fc37 fedora 66 k jna ppc64le 5.12.1-2.fc38 copr_base 288 k jsoncpp ppc64le 1.9.5-3.fc38 copr_base 101 k kernel-headers ppc64le 6.1.0-1.fc38 fedora 1.5 M langpacks-core-font-en noarch 3.0-27.fc38 fedora 9.9 k lcms2 ppc64le 2.14-1.fc38 copr_base 205 k libICE ppc64le 1.0.10-9.fc38 copr_base 77 k libICE-devel ppc64le 1.0.10-9.fc38 copr_base 46 k libSM ppc64le 1.2.3-11.fc38 copr_base 43 k libSM-devel ppc64le 1.2.3-11.fc38 copr_base 12 k libX11 ppc64le 1.8.1-2.fc38 copr_base 698 k libX11-common noarch 1.8.1-2.fc38 copr_base 150 k libX11-devel ppc64le 1.8.1-2.fc38 copr_base 939 k libX11-xcb ppc64le 1.8.1-2.fc38 copr_base 13 k libXau ppc64le 1.0.11-1.fc38 copr_base 33 k libXau-devel ppc64le 1.0.11-1.fc38 copr_base 14 k libXcomposite ppc64le 0.4.5-8.fc38 copr_base 24 k libXcursor ppc64le 1.2.1-2.fc38 copr_base 35 k libXcursor-devel ppc64le 1.2.1-2.fc38 copr_base 29 k libXext ppc64le 1.3.5-1.fc38 copr_base 41 k libXext-devel ppc64le 1.3.5-1.fc38 copr_base 72 k libXfixes ppc64le 6.0.0-4.fc38 copr_base 20 k libXfixes-devel ppc64le 6.0.0-4.fc38 copr_base 13 k libXft ppc64le 2.3.6-1.fc38 copr_base 77 k libXft-devel ppc64le 2.3.6-1.fc38 copr_base 36 k libXi ppc64le 1.8-3.fc38 copr_base 42 k libXi-devel ppc64le 1.8-3.fc38 copr_base 103 k libXinerama ppc64le 1.1.5-1.fc38 copr_base 15 k libXinerama-devel ppc64le 1.1.5-1.fc38 copr_base 13 k libXrandr ppc64le 1.5.2-9.fc38 copr_base 29 k libXrandr-devel ppc64le 1.5.2-9.fc38 copr_base 20 k libXrender ppc64le 0.9.11-1.fc38 copr_base 29 k libXrender-devel ppc64le 0.9.11-1.fc38 copr_base 19 k libXt ppc64le 1.2.1-3.fc38 copr_base 198 k libXt-devel ppc64le 1.2.1-3.fc38 copr_base 408 k libXtst ppc64le 1.2.4-1.fc38 copr_base 22 k libXv ppc64le 1.0.11-17.fc38 copr_base 20 k libXv-devel ppc64le 1.0.11-17.fc38 copr_base 39 k libXxf86vm ppc64le 1.1.5-1.fc38 fedora 18 k libasan ppc64le 13.0.0-0.4.fc38 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libgudev ppc64le 237-3.fc38 copr_base 35 k libicu ppc64le 71.1-2.fc38 copr_base 10 M libicu-devel ppc64le 71.1-2.fc38 copr_base 844 k libinput ppc64le 1.22.0-2.fc38 copr_base 214 k libjpeg-turbo ppc64le 2.1.4-1.fc38 copr_base 209 k libmng ppc64le 2.0.3-16.fc38 copr_base 207 k libmount-devel ppc64le 2.38.1-3.fc38 fedora 18 k libmpc ppc64le 1.2.1-5.fc38 copr_base 85 k libnauty ppc64le 2.8.6-1.fc38 copr_base 649 k libpng ppc64le 2:1.6.37-13.fc38 copr_base 139 k libpng-devel ppc64le 2:1.6.37-13.fc38 copr_base 295 k libquadmath ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 195 k libselinux-devel ppc64le 3.5-0.rc1.1.fc38 fedora 150 k libsepol-devel ppc64le 3.5-0.rc1.1.fc38 fedora 49 k libstdc++-devel ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 2.4 M libtiff ppc64le 4.4.0-4.fc38 copr_base 233 k libtool-ltdl ppc64le 2.4.7-3.0.1.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 41 k libubsan ppc64le 13.0.0-0.4.fc38 https_jakub_fedorapeople_org_fedora_gcc13_arch 234 k libuv ppc64le 1:1.44.2-2.fc38 copr_base 162 k libwacom ppc64le 2.4.0-1.fc38 copr_base 47 k libwacom-data noarch 2.4.0-1.fc38 copr_base 111 k libwayland-client ppc64le 1.21.0-1.fc37 fedora 35 k libwayland-server ppc64le 1.21.0-1.fc37 fedora 46 k libwebp ppc64le 1.2.4-2.fc38 copr_base 260 k libxcb ppc64le 1.13.1-10.fc38 copr_base 244 k libxcb-devel ppc64le 1.13.1-10.fc38 copr_base 1.0 M libxcrypt-devel ppc64le 4.4.33-5.fc38 copr_base 31 k libxkbcommon ppc64le 1.4.1-2.fc38 copr_base 153 k libxkbcommon-x11 ppc64le 1.4.1-2.fc38 copr_base 23 k libxml2-devel ppc64le 2.10.3-2.fc38 copr_base 502 k libxshmfence ppc64le 1.3-11.fc38 copr_base 13 k lksctp-tools ppc64le 1.0.19-2.fc38 copr_base 96 k llvm ppc64le 15.0.6-2.fc38 copr_base 13 M llvm-libs ppc64le 15.0.6-2.fc38 copr_base 26 M llvm-static ppc64le 15.0.6-2.fc38 copr_base 34 M llvm-test ppc64le 15.0.6-2.fc38 copr_base 613 k lua ppc64le 5.4.4-6.fc38 copr_base 201 k lua-filesystem ppc64le 1.8.0-7.fc38 copr_base 35 k lua-json noarch 1.3.4-2.fc37 fedora 30 k lua-lpeg ppc64le 1.0.2-9.fc38 copr_base 71 k lua-posix ppc64le 35.1-4.fc38 copr_base 140 k lua-term ppc64le 0.07-16.fc38 copr_base 16 k mesa-libEGL ppc64le 22.3.1-1.fc38 copr_base 147 k mesa-libGL ppc64le 22.3.1-1.fc38 copr_base 196 k mesa-libGLU ppc64le 9.0.1-7.fc38 copr_base 173 k mesa-libGLU-devel ppc64le 9.0.1-7.fc38 copr_base 13 k mesa-libgbm ppc64le 22.3.1-1.fc38 copr_base 50 k mesa-libglapi ppc64le 22.3.1-1.fc38 copr_base 56 k metis ppc64le 5.1.0-33.fc38 copr_base 602 k mkfontscale ppc64le 1.2.2-2.fc38 copr_base 35 k mockito noarch 3.12.4-5.fc38 fedora 583 k mp ppc64le 3.1.0-40.20200303git7fd4828.fc38 copr_base 1.0 M mpdecimal ppc64le 2.5.1-4.fc38 copr_base 118 k mtdev ppc64le 1.1.6-4.fc38 copr_base 23 k ncurses-c++-libs ppc64le 6.3-5.20221126.fc38 copr_base 39 k ncurses-devel ppc64le 6.3-5.20221126.fc38 copr_base 522 k nspr ppc64le 4.35.0-2.fc38 fedora 170 k nss ppc64le 3.85.0-1.fc38 fedora 786 k nss-softokn ppc64le 3.85.0-1.fc38 fedora 1.1 M nss-softokn-freebl ppc64le 3.85.0-1.fc38 fedora 334 k nss-sysinit ppc64le 3.85.0-1.fc38 fedora 18 k nss-util ppc64le 3.85.0-1.fc38 fedora 96 k objectweb-asm noarch 9.3-4.fc38 fedora 354 k objenesis noarch 3.3-1.fc38 fedora 115 k openblas ppc64le 0.3.21-4.fc38 fedora 35 k openblas-openmp ppc64le 0.3.21-4.fc38 fedora 4.4 M opentest4j noarch 1.2.0-11.fc38 fedora 24 k pcre2-devel ppc64le 10.40-1.fc38.1 copr_base 474 k pcre2-utf16 ppc64le 10.40-1.fc38.1 copr_base 221 k pcre2-utf32 ppc64le 10.40-1.fc38.1 copr_base 209 k pixman ppc64le 0.40.0-6.fc38 copr_base 226 k procps-ng ppc64le 3.3.17-8.fc38 copr_base 373 k pyproject-rpm-macros noarch 1.5.0-1.fc38 fedora 40 k python-pip-wheel noarch 22.3.1-1.fc38 fedora 1.4 M python-rpm-macros noarch 3.11-6.fc38 fedora 19 k python-setuptools-wheel noarch 65.5.1-1.fc38 fedora 715 k python3 ppc64le 3.11.1-1.fc38 copr_base 28 k python3-libs ppc64le 3.11.1-1.fc38 copr_base 9.3 M python3-numpy ppc64le 1:1.23.5-1.fc38 copr_base 7.3 M python3-packaging noarch 21.3-7.fc38 fedora 98 k python3-pyparsing noarch 3.0.9-2.fc37 fedora 262 k python3-rpm-generators noarch 13-2.fc37 fedora 30 k python3-rpm-macros noarch 3.11-6.fc38 fedora 15 k qt ppc64le 1:4.8.7-70.fc38 copr_base 4.7 M qt-common noarch 1:4.8.7-70.fc38 copr_base 8.0 k qt-settings noarch 37.0-1.fc38 fedora 11 k qt-x11 ppc64le 1:4.8.7-70.fc38 copr_base 13 M qt5-qtbase ppc64le 5.15.7-1.fc38 copr_base 3.8 M qt5-qtbase-common noarch 5.15.7-1.fc38 copr_base 12 k qt5-qtbase-gui ppc64le 5.15.7-1.fc38 copr_base 6.9 M rhash ppc64le 1.4.3-1.fc38 copr_base 206 k scala noarch 2.13.10-1.fc38 fedora 10 M scala-library noarch 2.13.10-1.fc38 fedora 5.0 M scala-reflect noarch 2.13.10-1.fc38 fedora 3.2 M scotch ppc64le 6.1.2-3.fc38 copr_base 461 k suitesparse ppc64le 5.13.0-1.fc38 fedora 1.1 M sysprof-capture-devel ppc64le 3.46.0-1.fc38 fedora 66 k tcl ppc64le 1:8.6.12-3.fc38 fedora 1.2 M ttmkfdir ppc64le 3.0.9-66.fc37 fedora 56 k tzdata-java noarch 2022g-1.fc38 fedora 208 k unixODBC ppc64le 2.3.11-1.fc38 fedora 509 k vim-filesystem noarch 2:9.0.1054-1.fc38 fedora 19 k xcb-util ppc64le 0.4.0-20.fc37 fedora 19 k xcb-util-image ppc64le 0.4.1-1.fc38 fedora 20 k xcb-util-keysyms ppc64le 0.4.1-1.fc38 fedora 14 k xcb-util-renderutil ppc64le 0.3.10-1.fc38 fedora 18 k xcb-util-wm ppc64le 0.4.2-1.fc38 fedora 32 k xkeyboard-config noarch 2.36-3.fc38 fedora 956 k xml-common noarch 0.6.3-59.fc37 fedora 31 k xorg-x11-fonts-Type1 noarch 7.5-34.fc37 fedora 505 k xorg-x11-proto-devel noarch 2022.2-2.fc38 fedora 299 k xz-devel ppc64le 5.2.9-1.fc38 fedora 58 k Transaction Summary ============================================================================================================================== Install 285 Packages Total size: 403 M Total download size: 351 M Installed size: 1.8 G Downloading Packages: [SKIPPED] gc-8.2.2-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] guile22-2.2.7-6.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libmpc-1.2.1-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libxcrypt-devel-4.4.33-5.fc38.ppc64le.rpm: Already downloaded [SKIPPED] make-4.3-11.fc38.ppc64le.rpm: Already downloaded [SKIPPED] pcre2-devel-10.40-1.fc38.1.ppc64le.rpm: Already downloaded [SKIPPED] pcre2-utf16-10.40-1.fc38.1.ppc64le.rpm: Already downloaded [SKIPPED] pcre2-utf32-10.40-1.fc38.1.ppc64le.rpm: Already downloaded [SKIPPED] annobin-docs-10.99-1.0.1.fc38.noarch.rpm: Already downloaded [SKIPPED] annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] cpp-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gcc-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libasan-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libatomic-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libubsan-13.0.0-0.4.fc38.ppc64le.rpm: Already downloaded [SKIPPED] emacs-filesystem-28.1-3.fc37.noarch.rpm: Already downloaded [SKIPPED] glibc-devel-2.36.9000-19.fc38.ppc64le.rpm: Already downloaded [SKIPPED] kernel-headers-6.1.0-1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libselinux-devel-3.5-0.rc1.1.fc38.ppc64le.rpm: Already downloaded [SKIPPED] libsepol-devel-3.5-0.rc1.1.fc38.ppc64le.rpm: Already downloaded (23/285): Lmod-8.7.14-1.fc38.ppc64le.rpm 731 kB/s | 231 kB 00:00 (24/285): alsa-lib-1.2.8-2.fc38.ppc64le.rpm 8.5 MB/s | 570 kB 00:00 (25/285): MUMPS-common-5.5.1-1.fc38.noarch.rpm 2.1 MB/s | 831 kB 00:00 (26/285): avahi-libs-0.8-19.fc38.ppc64le.rpm 4.7 MB/s | 72 kB 00:00 (27/285): boost-1.78.0-9.fc38.ppc64le.rpm 1.2 MB/s | 15 kB 00:00 (28/285): boost-atomic-1.78.0-9.fc38.ppc64le.rp 1.7 MB/s | 20 kB 00:00 (29/285): boost-chrono-1.78.0-9.fc38.ppc64le.rp 2.2 MB/s | 28 kB 00:00 (30/285): boost-container-1.78.0-9.fc38.ppc64le 3.2 MB/s | 43 kB 00:00 (31/285): boost-context-1.78.0-9.fc38.ppc64le.r 1.4 MB/s | 18 kB 00:00 (32/285): boost-contract-1.78.0-9.fc38.ppc64le. 3.4 MB/s | 48 kB 00:00 (33/285): boost-coroutine-1.78.0-9.fc38.ppc64le 1.6 MB/s | 24 kB 00:00 (34/285): boost-date-time-1.78.0-9.fc38.ppc64le 1.4 MB/s | 17 kB 00:00 (35/285): boost-fiber-1.78.0-9.fc38.ppc64le.rpm 480 kB/s | 45 kB 00:00 (36/285): MUMPS-5.5.1-1.fc38.ppc64le.rpm 3.4 MB/s | 2.0 MB 00:00 (37/285): boost-filesystem-1.78.0-9.fc38.ppc64l 887 kB/s | 68 kB 00:00 (38/285): boost-graph-1.78.0-9.fc38.ppc64le.rpm 2.3 MB/s | 160 kB 00:00 (39/285): boost-iostreams-1.78.0-9.fc38.ppc64le 951 kB/s | 42 kB 00:00 (40/285): boost-json-1.78.0-9.fc38.ppc64le.rpm 2.7 MB/s | 117 kB 00:00 (41/285): boost-locale-1.78.0-9.fc38.ppc64le.rp 3.6 MB/s | 245 kB 00:00 (42/285): boost-log-1.78.0-9.fc38.ppc64le.rpm 5.5 MB/s | 524 kB 00:00 (43/285): boost-math-1.78.0-9.fc38.ppc64le.rpm 3.5 MB/s | 295 kB 00:00 (44/285): boost-nowide-1.78.0-9.fc38.ppc64le.rp 321 kB/s | 22 kB 00:00 (45/285): boost-numpy3-1.78.0-9.fc38.ppc64le.rp 442 kB/s | 30 kB 00:00 (46/285): boost-program-options-1.78.0-9.fc38.p 1.3 MB/s | 117 kB 00:00 (47/285): boost-python3-1.78.0-9.fc38.ppc64le.r 1.4 MB/s | 119 kB 00:00 (48/285): boost-devel-1.78.0-9.fc38.ppc64le.rpm 17 MB/s | 11 MB 00:00 (49/285): boost-random-1.78.0-9.fc38.ppc64le.rp 220 kB/s | 27 kB 00:00 (50/285): boost-regex-1.78.0-9.fc38.ppc64le.rpm 1.1 MB/s | 122 kB 00:00 (51/285): boost-serialization-1.78.0-9.fc38.ppc 8.2 MB/s | 139 kB 00:00 (52/285): boost-stacktrace-1.78.0-9.fc38.ppc64l 1.9 MB/s | 32 kB 00:00 (53/285): boost-system-1.78.0-9.fc38.ppc64le.rp 1.0 MB/s | 17 kB 00:00 (54/285): boost-test-1.78.0-9.fc38.ppc64le.rpm 13 MB/s | 251 kB 00:00 (55/285): boost-thread-1.78.0-9.fc38.ppc64le.rp 3.1 MB/s | 63 kB 00:00 (56/285): boost-timer-1.78.0-9.fc38.ppc64le.rpm 2.2 MB/s | 46 kB 00:00 (57/285): boost-type_erasure-1.78.0-9.fc38.ppc6 2.9 MB/s | 35 kB 00:00 (58/285): boost-wave-1.78.0-9.fc38.ppc64le.rpm 13 MB/s | 239 kB 00:00 (59/285): brotli-1.0.9-9.fc38.ppc64le.rpm 14 MB/s | 345 kB 00:00 (60/285): brotli-devel-1.0.9-9.fc38.ppc64le.rpm 2.0 MB/s | 32 kB 00:00 (61/285): bzip2-devel-1.0.8-12.fc38.ppc64le.rpm 10 MB/s | 214 kB 00:00 (62/285): cairo-1.17.6-2.fc38.ppc64le.rpm 22 MB/s | 757 kB 00:00 (63/285): cliquer-libs-1.22-4.fc38.ppc64le.rpm 1.2 MB/s | 42 kB 00:00 (64/285): cmake-filesystem-3.25.1-1.fc38.ppc64l 167 kB/s | 17 kB 00:00 (65/285): cmake-data-3.25.1-1.fc38.noarch.rpm 10 MB/s | 1.7 MB 00:00 (66/285): cmake-rpm-macros-3.25.1-1.fc38.noarch 138 kB/s | 16 kB 00:00 (67/285): cmake-3.25.1-1.fc38.ppc64le.rpm 20 MB/s | 6.8 MB 00:00 (68/285): coin-or-Cbc-2.10.5-10.fc38.ppc64le.rp 5.2 MB/s | 850 kB 00:00 (69/285): coin-or-Cgl-0.60.3-8.fc38.ppc64le.rpm 3.9 MB/s | 444 kB 00:00 (70/285): coin-or-CoinUtils-2.11.4-8.fc38.ppc64 7.2 MB/s | 523 kB 00:00 (71/285): coin-or-Osi-0.108.6-6.fc38.ppc64le.rp 4.5 MB/s | 324 kB 00:00 (72/285): coin-or-Clp-1.17.6-10.fc38.ppc64le.rp 11 MB/s | 976 kB 00:00 (73/285): cups-libs-2.4.2-5.fc38.ppc64le.rpm 14 MB/s | 320 kB 00:00 (74/285): dbus-libs-1.14.4-1.fc38.ppc64le.rpm 11 MB/s | 177 kB 00:00 (75/285): expat-2.5.0-1.fc38.ppc64le.rpm 8.3 MB/s | 117 kB 00:00 (76/285): coin-or-lemon-devel-1.3.1-25.fc38.ppc 4.1 MB/s | 287 kB 00:00 (77/285): fontconfig-2.14.1-2.fc38.ppc64le.rpm 18 MB/s | 328 kB 00:00 (78/285): fontconfig-devel-2.14.1-2.fc38.ppc64l 7.9 MB/s | 128 kB 00:00 (79/285): freetype-2.12.1-3.fc38.ppc64le.rpm 23 MB/s | 471 kB 00:00 (80/285): freetype-devel-2.12.1-3.fc38.ppc64le. 26 MB/s | 859 kB 00:00 (81/285): gecode-6.2.0-10.fc38.ppc64le.rpm 29 MB/s | 3.2 MB 00:00 (82/285): gettext-0.21.1-1.fc38.ppc64le.rpm 9.5 MB/s | 1.0 MB 00:00 (83/285): coin-or-lemon-1.3.1-25.fc38.ppc64le.r 364 kB/s | 85 kB 00:00 (84/285): gettext-envsubst-0.21.1-1.fc38.ppc64l 1.2 MB/s | 38 kB 00:00 (85/285): gettext-libs-0.21.1-1.fc38.ppc64le.rp 9.4 MB/s | 367 kB 00:00 (86/285): gettext-runtime-0.21.1-1.fc38.ppc64le 2.7 MB/s | 109 kB 00:00 (87/285): glib2-2.74.1-2.fc38.ppc64le.rpm 26 MB/s | 2.8 MB 00:00 (88/285): glib2-devel-2.74.1-2.fc38.ppc64le.rpm 5.6 MB/s | 540 kB 00:00 (89/285): glpk-5.0-5.fc38.ppc64le.rpm 4.3 MB/s | 413 kB 00:00 (90/285): glx-utils-8.4.0-14.20210504git0f9e7d9 2.0 MB/s | 44 kB 00:00 (91/285): graphite2-1.3.14-10.fc38.ppc64le.rpm 4.9 MB/s | 105 kB 00:00 (92/285): gnutls-3.7.8-9.fc38.ppc64le.rpm 22 MB/s | 1.1 MB 00:00 (93/285): graphite2-devel-1.3.14-10.fc38.ppc64l 649 kB/s | 21 kB 00:00 (94/285): gsl-2.7.1-2.fc38.ppc64le.rpm 23 MB/s | 1.2 MB 00:00 (95/285): harfbuzz-6.0.0-1.fc38.ppc64le.rpm 18 MB/s | 897 kB 00:00 (96/285): harfbuzz-devel-6.0.0-1.fc38.ppc64le.r 7.1 MB/s | 367 kB 00:00 (97/285): harfbuzz-icu-6.0.0-1.fc38.ppc64le.rpm 515 kB/s | 17 kB 00:00 (98/285): java-1.8.0-openjdk-1.8.0.352.b08-1.fc 10 MB/s | 532 kB 00:00 (99/285): java-1.8.0-openjdk-devel-1.8.0.352.b0 9.6 MB/s | 7.4 MB 00:00 (100/285): jbigkit-libs-2.1-24.fc38.ppc64le.rpm 289 kB/s | 57 kB 00:00 (101/285): jna-5.12.1-2.fc38.ppc64le.rpm 1.1 MB/s | 288 kB 00:00 (102/285): jsoncpp-1.9.5-3.fc38.ppc64le.rpm 430 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zlib-devel-1.2.13-1.fc38.ppc64le.rpm 1.2 MB/s | 45 kB 00:00 -------------------------------------------------------------------------------- Total 26 MB/s | 351 MB 00:13 Running transaction check Transaction check succeeded. Running transaction test Transaction test succeeded. Running transaction Running scriptlet: copy-jdk-configs-4.1-1.fc38.noarch 1/1 Running scriptlet: java-17-openjdk-headless-1:17.0.6.0.1-0.3.ea.fc38.pp 1/1 Running scriptlet: java-1.8.0-openjdk-headless-1:1.8.0.352.b08-1.fc38.p 1/1 Preparing : 1/1 Installing : javapackages-filesystem-6.1.0-5.fc38.noarch 1/285 Installing : xorg-x11-proto-devel-2022.2-2.fc38.noarch 2/285 Installing : boost-system-1.78.0-9.fc38.ppc64le 3/285 Installing : libicu-71.1-2.fc38.ppc64le 4/285 Installing : boost-chrono-1.78.0-9.fc38.ppc64le 5/285 Installing : boost-thread-1.78.0-9.fc38.ppc64le 6/285 Installing : nspr-4.35.0-2.fc38.ppc64le 7/285 Installing : libpng-2:1.6.37-13.fc38.ppc64le 8/285 Installing : libglvnd-1:1.6.0-1.fc38.ppc64le 9/285 Installing : libICE-1.0.10-9.fc38.ppc64le 10/285 Installing : expat-2.5.0-1.fc38.ppc64le 11/285 Installing : cmake-filesystem-3.25.1-1.fc38.ppc64le 12/285 Installing : libSM-1.2.3-11.fc38.ppc64le 13/285 Installing : nss-util-3.85.0-1.fc38.ppc64le 14/285 Installing : 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libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le 209/285 Verifying : libubsan-13.0.0-0.4.fc38.ppc64le 210/285 Verifying : byte-buddy-1.12.10-2.fc38.noarch 211/285 Verifying : byte-buddy-agent-1.12.10-2.fc38.noarch 212/285 Verifying : copy-jdk-configs-4.1-1.fc38.noarch 213/285 Verifying : crypto-policies-scripts-20221215-1.gita4c31a3.fc 214/285 Verifying : emacs-filesystem-1:28.1-3.fc37.noarch 215/285 Verifying : flexiblas-3.2.1-3.fc38.ppc64le 216/285 Verifying : flexiblas-netlib-3.2.1-3.fc38.ppc64le 217/285 Verifying : flexiblas-openblas-openmp-3.2.1-3.fc38.ppc64le 218/285 Verifying : fonts-filesystem-1:2.0.5-10.fc38.noarch 219/285 Verifying : gl-manpages-1.1-25.20190306.fc37.noarch 220/285 Verifying : glibc-devel-2.36.9000-19.fc38.ppc64le 221/285 Verifying : google-noto-fonts-common-20201206^1.git0c78c8329 222/285 Verifying : google-noto-sans-vf-fonts-20201206^1.git0c78c832 223/285 Verifying : jacop-4.8-9.fc37.noarch 224/285 Verifying : java-diff-utils-4.12-1.fc37.noarch 225/285 Verifying : javapackages-filesystem-6.1.0-5.fc38.noarch 226/285 Verifying : javapackages-tools-6.1.0-5.fc38.noarch 227/285 Verifying : jline-builtins-3.21.0-6.fc37.noarch 228/285 Verifying : jline-reader-3.21.0-6.fc37.noarch 229/285 Verifying : jline-style-3.21.0-6.fc37.noarch 230/285 Verifying : jline-terminal-3.21.0-6.fc37.noarch 231/285 Verifying : jline-terminal-jna-3.21.0-6.fc37.noarch 232/285 Verifying : kernel-headers-6.1.0-1.fc38.ppc64le 233/285 Verifying : langpacks-core-font-en-3.0-27.fc38.noarch 234/285 Verifying : libXxf86vm-1.1.5-1.fc38.ppc64le 235/285 Verifying : libblkid-devel-2.38.1-3.fc38.ppc64le 236/285 Verifying : libmount-devel-2.38.1-3.fc38.ppc64le 237/285 Verifying : libselinux-devel-3.5-0.rc1.1.fc38.ppc64le 238/285 Verifying : libsepol-devel-3.5-0.rc1.1.fc38.ppc64le 239/285 Verifying : libwayland-client-1.21.0-1.fc37.ppc64le 240/285 Verifying : libwayland-server-1.21.0-1.fc37.ppc64le 241/285 Verifying : lua-json-1.3.4-2.fc37.noarch 242/285 Verifying : mockito-3.12.4-5.fc38.noarch 243/285 Verifying : nspr-4.35.0-2.fc38.ppc64le 244/285 Verifying : nss-3.85.0-1.fc38.ppc64le 245/285 Verifying : nss-softokn-3.85.0-1.fc38.ppc64le 246/285 Verifying : nss-softokn-freebl-3.85.0-1.fc38.ppc64le 247/285 Verifying : nss-sysinit-3.85.0-1.fc38.ppc64le 248/285 Verifying : nss-util-3.85.0-1.fc38.ppc64le 249/285 Verifying : objectweb-asm-9.3-4.fc38.noarch 250/285 Verifying : objenesis-3.3-1.fc38.noarch 251/285 Verifying : openblas-0.3.21-4.fc38.ppc64le 252/285 Verifying : openblas-openmp-0.3.21-4.fc38.ppc64le 253/285 Verifying : opentest4j-1.2.0-11.fc38.noarch 254/285 Verifying : pyproject-rpm-macros-1.5.0-1.fc38.noarch 255/285 Verifying : python-pip-wheel-22.3.1-1.fc38.noarch 256/285 Verifying : python-rpm-macros-3.11-6.fc38.noarch 257/285 Verifying : python-setuptools-wheel-65.5.1-1.fc38.noarch 258/285 Verifying : python3-packaging-21.3-7.fc38.noarch 259/285 Verifying : python3-pyparsing-3.0.9-2.fc37.noarch 260/285 Verifying : python3-rpm-generators-13-2.fc37.noarch 261/285 Verifying : python3-rpm-macros-3.11-6.fc38.noarch 262/285 Verifying : python3-setuptools-65.5.1-1.fc38.noarch 263/285 Verifying : qt-settings-37.0-1.fc38.noarch 264/285 Verifying : scala-2.13.10-1.fc38.noarch 265/285 Verifying : scala-library-2.13.10-1.fc38.noarch 266/285 Verifying : scala-reflect-2.13.10-1.fc38.noarch 267/285 Verifying : suitesparse-5.13.0-1.fc38.ppc64le 268/285 Verifying : sysprof-capture-devel-3.46.0-1.fc38.ppc64le 269/285 Verifying : tcl-1:8.6.12-3.fc38.ppc64le 270/285 Verifying : ttmkfdir-3.0.9-66.fc37.ppc64le 271/285 Verifying : tzdata-java-2022g-1.fc38.noarch 272/285 Verifying : unixODBC-2.3.11-1.fc38.ppc64le 273/285 Verifying : vim-filesystem-2:9.0.1054-1.fc38.noarch 274/285 Verifying : xcb-util-0.4.0-20.fc37.ppc64le 275/285 Verifying : xcb-util-image-0.4.1-1.fc38.ppc64le 276/285 Verifying : xcb-util-keysyms-0.4.1-1.fc38.ppc64le 277/285 Verifying : xcb-util-renderutil-0.3.10-1.fc38.ppc64le 278/285 Verifying : xcb-util-wm-0.4.2-1.fc38.ppc64le 279/285 Verifying : xkeyboard-config-2.36-3.fc38.noarch 280/285 Verifying : xml-common-0.6.3-59.fc37.noarch 281/285 Verifying : xorg-x11-fonts-Type1-7.5-34.fc37.noarch 282/285 Verifying : xorg-x11-proto-devel-2022.2-2.fc38.noarch 283/285 Verifying : xz-devel-5.2.9-1.fc38.ppc64le 284/285 Verifying : zlib-devel-1.2.13-1.fc38.ppc64le 285/285 Installed: Lmod-8.7.14-1.fc38.ppc64le MUMPS-5.5.1-1.fc38.ppc64le MUMPS-common-5.5.1-1.fc38.noarch alsa-lib-1.2.8-2.fc38.ppc64le annobin-docs-10.99-1.0.1.fc38.noarch annobin-plugin-gcc-10.99-1.0.1.fc38.ppc64le avahi-libs-0.8-19.fc38.ppc64le boost-1.78.0-9.fc38.ppc64le boost-atomic-1.78.0-9.fc38.ppc64le boost-chrono-1.78.0-9.fc38.ppc64le boost-container-1.78.0-9.fc38.ppc64le boost-context-1.78.0-9.fc38.ppc64le boost-contract-1.78.0-9.fc38.ppc64le boost-coroutine-1.78.0-9.fc38.ppc64le boost-date-time-1.78.0-9.fc38.ppc64le boost-devel-1.78.0-9.fc38.ppc64le boost-fiber-1.78.0-9.fc38.ppc64le boost-filesystem-1.78.0-9.fc38.ppc64le boost-graph-1.78.0-9.fc38.ppc64le boost-iostreams-1.78.0-9.fc38.ppc64le boost-json-1.78.0-9.fc38.ppc64le boost-locale-1.78.0-9.fc38.ppc64le boost-log-1.78.0-9.fc38.ppc64le boost-math-1.78.0-9.fc38.ppc64le boost-nowide-1.78.0-9.fc38.ppc64le boost-numpy3-1.78.0-9.fc38.ppc64le boost-program-options-1.78.0-9.fc38.ppc64le boost-python3-1.78.0-9.fc38.ppc64le boost-random-1.78.0-9.fc38.ppc64le boost-regex-1.78.0-9.fc38.ppc64le boost-serialization-1.78.0-9.fc38.ppc64le boost-stacktrace-1.78.0-9.fc38.ppc64le boost-system-1.78.0-9.fc38.ppc64le boost-test-1.78.0-9.fc38.ppc64le boost-thread-1.78.0-9.fc38.ppc64le boost-timer-1.78.0-9.fc38.ppc64le boost-type_erasure-1.78.0-9.fc38.ppc64le boost-wave-1.78.0-9.fc38.ppc64le brotli-1.0.9-9.fc38.ppc64le brotli-devel-1.0.9-9.fc38.ppc64le byte-buddy-1.12.10-2.fc38.noarch byte-buddy-agent-1.12.10-2.fc38.noarch bzip2-devel-1.0.8-12.fc38.ppc64le cairo-1.17.6-2.fc38.ppc64le cliquer-libs-1.22-4.fc38.ppc64le cmake-3.25.1-1.fc38.ppc64le cmake-data-3.25.1-1.fc38.noarch cmake-filesystem-3.25.1-1.fc38.ppc64le cmake-rpm-macros-3.25.1-1.fc38.noarch coin-or-Cbc-2.10.5-10.fc38.ppc64le coin-or-Cgl-0.60.3-8.fc38.ppc64le coin-or-Clp-1.17.6-10.fc38.ppc64le coin-or-CoinUtils-2.11.4-8.fc38.ppc64le coin-or-Osi-0.108.6-6.fc38.ppc64le coin-or-lemon-1.3.1-25.fc38.ppc64le coin-or-lemon-devel-1.3.1-25.fc38.ppc64le copy-jdk-configs-4.1-1.fc38.noarch cpp-13.0.0-0.4.fc38.ppc64le crypto-policies-scripts-20221215-1.gita4c31a3.fc38.noarch cups-libs-1:2.4.2-5.fc38.ppc64le dbus-libs-1:1.14.4-1.fc38.ppc64le emacs-filesystem-1:28.1-3.fc37.noarch expat-2.5.0-1.fc38.ppc64le flexiblas-3.2.1-3.fc38.ppc64le flexiblas-netlib-3.2.1-3.fc38.ppc64le flexiblas-openblas-openmp-3.2.1-3.fc38.ppc64le fontconfig-2.14.1-2.fc38.ppc64le fontconfig-devel-2.14.1-2.fc38.ppc64le fonts-filesystem-1:2.0.5-10.fc38.noarch freetype-2.12.1-3.fc38.ppc64le freetype-devel-2.12.1-3.fc38.ppc64le gc-8.2.2-1.fc38.ppc64le gcc-13.0.0-0.4.fc38.ppc64le gcc-c++-13.0.0-0.4.fc38.ppc64le gcc-plugin-annobin-13.0.0-0.4.fc38.ppc64le gecode-6.2.0-10.fc38.ppc64le gettext-0.21.1-1.fc38.ppc64le gettext-envsubst-0.21.1-1.fc38.ppc64le gettext-libs-0.21.1-1.fc38.ppc64le gettext-runtime-0.21.1-1.fc38.ppc64le gl-manpages-1.1-25.20190306.fc37.noarch glib2-2.74.1-2.fc38.ppc64le glib2-devel-2.74.1-2.fc38.ppc64le glibc-devel-2.36.9000-19.fc38.ppc64le glpk-5.0-5.fc38.ppc64le glx-utils-8.4.0-14.20210504git0f9e7d9.fc38.ppc64le gnutls-3.7.8-9.fc38.ppc64le google-noto-fonts-common-20201206^1.git0c78c8329-9.fc38.noarch google-noto-sans-vf-fonts-20201206^1.git0c78c8329-9.fc38.noarch graphite2-1.3.14-10.fc38.ppc64le graphite2-devel-1.3.14-10.fc38.ppc64le gsl-2.7.1-2.fc38.ppc64le guile22-2.2.7-6.fc38.ppc64le harfbuzz-6.0.0-1.fc38.ppc64le harfbuzz-devel-6.0.0-1.fc38.ppc64le harfbuzz-icu-6.0.0-1.fc38.ppc64le jacop-4.8-9.fc37.noarch java-1.8.0-openjdk-1:1.8.0.352.b08-1.fc38.ppc64le java-1.8.0-openjdk-devel-1:1.8.0.352.b08-1.fc38.ppc64le java-1.8.0-openjdk-headless-1:1.8.0.352.b08-1.fc38.ppc64le java-17-openjdk-headless-1:17.0.6.0.1-0.3.ea.fc38.ppc64le java-diff-utils-4.12-1.fc37.noarch javapackages-filesystem-6.1.0-5.fc38.noarch javapackages-tools-6.1.0-5.fc38.noarch jbigkit-libs-2.1-24.fc38.ppc64le jline-builtins-3.21.0-6.fc37.noarch jline-reader-3.21.0-6.fc37.noarch jline-style-3.21.0-6.fc37.noarch jline-terminal-3.21.0-6.fc37.noarch jline-terminal-jna-3.21.0-6.fc37.noarch jna-5.12.1-2.fc38.ppc64le jsoncpp-1.9.5-3.fc38.ppc64le kernel-headers-6.1.0-1.fc38.ppc64le langpacks-core-font-en-3.0-27.fc38.noarch lcms2-2.14-1.fc38.ppc64le libICE-1.0.10-9.fc38.ppc64le libICE-devel-1.0.10-9.fc38.ppc64le libSM-1.2.3-11.fc38.ppc64le libSM-devel-1.2.3-11.fc38.ppc64le libX11-1.8.1-2.fc38.ppc64le libX11-common-1.8.1-2.fc38.noarch libX11-devel-1.8.1-2.fc38.ppc64le libX11-xcb-1.8.1-2.fc38.ppc64le libXau-1.0.11-1.fc38.ppc64le libXau-devel-1.0.11-1.fc38.ppc64le libXcomposite-0.4.5-8.fc38.ppc64le libXcursor-1.2.1-2.fc38.ppc64le libXcursor-devel-1.2.1-2.fc38.ppc64le libXext-1.3.5-1.fc38.ppc64le libXext-devel-1.3.5-1.fc38.ppc64le libXfixes-6.0.0-4.fc38.ppc64le libXfixes-devel-6.0.0-4.fc38.ppc64le libXft-2.3.6-1.fc38.ppc64le libXft-devel-2.3.6-1.fc38.ppc64le libXi-1.8-3.fc38.ppc64le libXi-devel-1.8-3.fc38.ppc64le libXinerama-1.1.5-1.fc38.ppc64le libXinerama-devel-1.1.5-1.fc38.ppc64le libXrandr-1.5.2-9.fc38.ppc64le libXrandr-devel-1.5.2-9.fc38.ppc64le libXrender-0.9.11-1.fc38.ppc64le libXrender-devel-0.9.11-1.fc38.ppc64le libXt-1.2.1-3.fc38.ppc64le libXt-devel-1.2.1-3.fc38.ppc64le libXtst-1.2.4-1.fc38.ppc64le libXv-1.0.11-17.fc38.ppc64le libXv-devel-1.0.11-17.fc38.ppc64le libXxf86vm-1.1.5-1.fc38.ppc64le libasan-13.0.0-0.4.fc38.ppc64le libatomic-13.0.0-0.4.fc38.ppc64le libb2-0.98.1-7.fc38.ppc64le libblkid-devel-2.38.1-3.fc38.ppc64le libdrm-2.4.114-1.fc38.ppc64le libedit-3.1-44.20221030cvs.fc38.ppc64le libedit-devel-3.1-44.20221030cvs.fc38.ppc64le libevdev-1.13.0-1.fc38.ppc64le libffi-devel-3.4.4-1.fc38.ppc64le libfontenc-1.1.6-1.fc38.ppc64le libgfortran-13.0.0-0.4.fc38.ppc64le libglvnd-1:1.6.0-1.fc38.ppc64le libglvnd-core-devel-1:1.6.0-1.fc38.ppc64le libglvnd-devel-1:1.6.0-1.fc38.ppc64le libglvnd-egl-1:1.6.0-1.fc38.ppc64le libglvnd-gles-1:1.6.0-1.fc38.ppc64le libglvnd-glx-1:1.6.0-1.fc38.ppc64le libglvnd-opengl-1:1.6.0-1.fc38.ppc64le libgudev-237-3.fc38.ppc64le libicu-71.1-2.fc38.ppc64le libicu-devel-71.1-2.fc38.ppc64le libinput-1.22.0-2.fc38.ppc64le libjpeg-turbo-2.1.4-1.fc38.ppc64le libmng-2.0.3-16.fc38.ppc64le libmount-devel-2.38.1-3.fc38.ppc64le libmpc-1.2.1-5.fc38.ppc64le libnauty-2.8.6-1.fc38.ppc64le libpng-2:1.6.37-13.fc38.ppc64le libpng-devel-2:1.6.37-13.fc38.ppc64le libquadmath-13.0.0-0.4.fc38.ppc64le libselinux-devel-3.5-0.rc1.1.fc38.ppc64le libsepol-devel-3.5-0.rc1.1.fc38.ppc64le libstdc++-devel-13.0.0-0.4.fc38.ppc64le libstdc++-static-13.0.0-0.4.fc38.ppc64le libtiff-4.4.0-4.fc38.ppc64le libtool-ltdl-2.4.7-3.0.1.fc38.ppc64le libubsan-13.0.0-0.4.fc38.ppc64le libuv-1:1.44.2-2.fc38.ppc64le libwacom-2.4.0-1.fc38.ppc64le libwacom-data-2.4.0-1.fc38.noarch libwayland-client-1.21.0-1.fc37.ppc64le libwayland-server-1.21.0-1.fc37.ppc64le libwebp-1.2.4-2.fc38.ppc64le libxcb-1.13.1-10.fc38.ppc64le libxcb-devel-1.13.1-10.fc38.ppc64le libxcrypt-devel-4.4.33-5.fc38.ppc64le libxkbcommon-1.4.1-2.fc38.ppc64le libxkbcommon-x11-1.4.1-2.fc38.ppc64le libxml2-devel-2.10.3-2.fc38.ppc64le libxshmfence-1.3-11.fc38.ppc64le lksctp-tools-1.0.19-2.fc38.ppc64le llvm-15.0.6-2.fc38.ppc64le llvm-devel-15.0.6-2.fc38.ppc64le llvm-libs-15.0.6-2.fc38.ppc64le llvm-static-15.0.6-2.fc38.ppc64le llvm-test-15.0.6-2.fc38.ppc64le lua-5.4.4-6.fc38.ppc64le lua-filesystem-1.8.0-7.fc38.ppc64le lua-json-1.3.4-2.fc37.noarch lua-lpeg-1.0.2-9.fc38.ppc64le lua-posix-35.1-4.fc38.ppc64le lua-term-0.07-16.fc38.ppc64le make-1:4.3-11.fc38.ppc64le mesa-libEGL-22.3.1-1.fc38.ppc64le mesa-libGL-22.3.1-1.fc38.ppc64le mesa-libGLU-9.0.1-7.fc38.ppc64le mesa-libGLU-devel-9.0.1-7.fc38.ppc64le mesa-libgbm-22.3.1-1.fc38.ppc64le mesa-libglapi-22.3.1-1.fc38.ppc64le metis-5.1.0-33.fc38.ppc64le mkfontscale-1.2.2-2.fc38.ppc64le mockito-3.12.4-5.fc38.noarch mp-3.1.0-40.20200303git7fd4828.fc38.ppc64le mpdecimal-2.5.1-4.fc38.ppc64le mtdev-1.1.6-4.fc38.ppc64le ncurses-c++-libs-6.3-5.20221126.fc38.ppc64le ncurses-devel-6.3-5.20221126.fc38.ppc64le nspr-4.35.0-2.fc38.ppc64le nss-3.85.0-1.fc38.ppc64le nss-softokn-3.85.0-1.fc38.ppc64le nss-softokn-freebl-3.85.0-1.fc38.ppc64le nss-sysinit-3.85.0-1.fc38.ppc64le nss-util-3.85.0-1.fc38.ppc64le objectweb-asm-9.3-4.fc38.noarch objenesis-3.3-1.fc38.noarch openblas-0.3.21-4.fc38.ppc64le openblas-openmp-0.3.21-4.fc38.ppc64le opentest4j-1.2.0-11.fc38.noarch pcre2-devel-10.40-1.fc38.1.ppc64le pcre2-utf16-10.40-1.fc38.1.ppc64le pcre2-utf32-10.40-1.fc38.1.ppc64le pixman-0.40.0-6.fc38.ppc64le procps-ng-3.3.17-8.fc38.ppc64le pyproject-rpm-macros-1.5.0-1.fc38.noarch python-pip-wheel-22.3.1-1.fc38.noarch python-rpm-macros-3.11-6.fc38.noarch python-setuptools-wheel-65.5.1-1.fc38.noarch python3-3.11.1-1.fc38.ppc64le python3-devel-3.11.1-1.fc38.ppc64le python3-libs-3.11.1-1.fc38.ppc64le python3-numpy-1:1.23.5-1.fc38.ppc64le python3-packaging-21.3-7.fc38.noarch python3-pyparsing-3.0.9-2.fc37.noarch python3-rpm-generators-13-2.fc37.noarch python3-rpm-macros-3.11-6.fc38.noarch python3-setuptools-65.5.1-1.fc38.noarch qt-1:4.8.7-70.fc38.ppc64le qt-common-1:4.8.7-70.fc38.noarch qt-devel-1:4.8.7-70.fc38.ppc64le qt-settings-37.0-1.fc38.noarch qt-x11-1:4.8.7-70.fc38.ppc64le qt5-qtbase-5.15.7-1.fc38.ppc64le qt5-qtbase-common-5.15.7-1.fc38.noarch qt5-qtbase-gui-5.15.7-1.fc38.ppc64le rhash-1.4.3-1.fc38.ppc64le scala-2.13.10-1.fc38.noarch scala-library-2.13.10-1.fc38.noarch scala-reflect-2.13.10-1.fc38.noarch scotch-6.1.2-3.fc38.ppc64le suitesparse-5.13.0-1.fc38.ppc64le sysprof-capture-devel-3.46.0-1.fc38.ppc64le tcl-1:8.6.12-3.fc38.ppc64le ttmkfdir-3.0.9-66.fc37.ppc64le tzdata-java-2022g-1.fc38.noarch unixODBC-2.3.11-1.fc38.ppc64le vim-filesystem-2:9.0.1054-1.fc38.noarch xcb-util-0.4.0-20.fc37.ppc64le xcb-util-image-0.4.1-1.fc38.ppc64le xcb-util-keysyms-0.4.1-1.fc38.ppc64le xcb-util-renderutil-0.3.10-1.fc38.ppc64le xcb-util-wm-0.4.2-1.fc38.ppc64le xkeyboard-config-2.36-3.fc38.noarch xml-common-0.6.3-59.fc37.noarch xorg-x11-fonts-Type1-7.5-34.fc37.noarch xorg-x11-proto-devel-2022.2-2.fc38.noarch xz-devel-5.2.9-1.fc38.ppc64le zlib-devel-1.2.13-1.fc38.ppc64le Complete! Finish: build setup for seqan-1.4.2-50.fc38.src.rpm Start: rpmbuild seqan-1.4.2-50.fc38.src.rpm Building target platforms: ppc64le Building for target ppc64le setting SOURCE_DATE_EPOCH=1658534400 Executing(%prep): /bin/sh -e /var/tmp/rpm-tmp.kO51oW + umask 022 + cd /builddir/build/BUILD + cd /builddir/build/BUILD + rm -rf seqan-1.4.2 + /usr/lib/rpm/rpmuncompress -x /builddir/build/SOURCES/seqan-src-1.4.2.tar.gz + STATUS=0 + '[' 0 -ne 0 ']' + cd seqan-1.4.2 + /usr/bin/chmod -Rf a+rX,u+w,g-w,o-w . Patch #0 (seqan-docpath.patch): + echo 'Patch #0 (seqan-docpath.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0 patching file util/cmake/SeqAnBuildSystem.cmake Patch #1 (seqan-exclude_splazers_fiona_tests.patch): + echo 'Patch #1 (seqan-exclude_splazers_fiona_tests.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0 patching file core/apps/splazers/CMakeLists.txt patching file core/apps/fiona/CMakeLists.txt Patch #2 (seqan-exclude_bstools_test.patch): + echo 'Patch #2 (seqan-exclude_bstools_test.patch):' + /usr/bin/patch --no-backup-if-mismatch -f -p0 --fuzz=0 patching file extras/apps/bs_tools/CMakeLists.txt patching file core/apps/samcat/CMakeLists.txt + find . -type f -name '*.h' -exec chmod 0644 '{}' ';' + find . -type f -name '*.cpp' -exec chmod 0644 '{}' ';' + cp -p extras/apps/rep_sep/LICENSE LGPLv3+.txt + cp -p core/apps/rabema/LICENSE GPLv3+.txt + cp -p LICENSE BSD.txt + cp -p extras/apps/seqan_flexbar/INFO extras/apps/seqan_flexbar/README + RPM_EC=0 ++ jobs -p + exit 0 Executing(%build): /bin/sh -e /var/tmp/rpm-tmp.K7F8tj + umask 022 + cd /builddir/build/BUILD + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seqan-1.4.2 + mkdir -p build/Release + pushd build/Release ~/build/BUILD/seqan-1.4.2/build/Release ~/build/BUILD/seqan-1.4.2 + SEQAN_OPT_FLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' + export 'CXXFLAGS=-std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon' + CXXFLAGS='-std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon' + export 'LDFLAGS=-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fPIC' + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes -fPIC' + cmake '-DCMAKE_CXX_FLAGS_RELEASE:STRING=-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC' -DCMAKE_INSTALL_PREFIX:PATH=/usr -DSYSCONF_INSTALL_DIR:PATH=/etc -DSHARE_INSTALL_PREFIX:PATH=/usr/share -DBUILD_SHARED_LIBS:BOOL=OFF -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_SKIP_INSTALL_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE -DCMAKE_BUILD_TYPE:STRING=Release -DSEQAN_BUILD_SYSTEM=SEQAN_RELEASE_APPS -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_APP_VERSION:STRING=1.4.2 -DZLIB_INCLUDE_DIR:PATH=/usr/include '-DZLIB_LIBRARY:FILEPATH=-L/usr/lib64 -lz' -DBZIP2_INCLUDE_DIR:PATH=/usr/include '-DBZIP2_LIBRARY:FILEPATH=-L/usr/lib64 -lbz2' -DLEMON_INCLUDE_DIR:PATH=/usr/include '-DLEMON_LIBRARY:FILEPATH=-L/usr/lib64 -lemon' -DBoost_INCLUDE_DIR:PATH=/usr/include -DPYTHON_EXECUTABLE:FILEPATH=/usr/bin/python3 -DCMAKE_SKIP_RPATH:BOOL=YES -DCMAKE_VERBOSE_MAKEFILE:BOOL=TRUE ../.. -- The C compiler identification is GNU 13.0.0 -- The CXX compiler identification is GNU 13.0.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done CMake Deprecation Warning at CMakeLists.txt:16 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Initializing SeqAn Build System... -- No revision system found. -- Repository date not determined. -- Repository revision not determined. -- Configuring core CMake Deprecation Warning at core/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at core/apps/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps CMake Deprecation Warning at core/apps/dfi/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/dfi -- Looking for include file execinfo.h -- Looking for include file execinfo.h - found -- Determined version is 1.4.2 -- Found PythonInterp: /usr/bin/python3 (found version "3.11.1") CMake Deprecation Warning at core/apps/fiona/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/fiona -- Try OpenMP C flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Try OpenMP CXX flag = [-fopenmp] -- Performing Test OpenMP_FLAG_DETECTED -- Performing Test OpenMP_FLAG_DETECTED - Success -- Found Boost: /usr/lib64/cmake/Boost-1.78.0/BoostConfig.cmake (found version "1.78.0") CMake Deprecation Warning at core/apps/mason/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/mason CMake Deprecation Warning at core/apps/micro_razers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/micro_razers CMake Deprecation Warning at core/apps/pair_align/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/pair_align CMake Deprecation Warning at core/apps/rabema/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/rabema CMake Deprecation Warning at core/apps/razers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/razers CMake Deprecation Warning at core/apps/razers2/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/razers2 CMake Deprecation Warning at core/apps/sak/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/sak CMake Deprecation Warning at core/apps/sam2matrix/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/sam2matrix CMake Deprecation Warning at core/apps/samcat/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/samcat CMake Deprecation Warning at core/apps/seqan_tcoffee/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/seqan_tcoffee CMake Deprecation Warning at core/apps/seqcons/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/seqcons CMake Deprecation Warning at core/apps/snp_store/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/snp_store CMake Deprecation Warning at core/apps/splazers/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/splazers CMake Deprecation Warning at core/apps/stellar/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/stellar CMake Deprecation Warning at core/apps/tree_recon/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring core/apps/tree_recon -- Configuring extras CMake Deprecation Warning at extras/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. CMake Deprecation Warning at extras/apps/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps CMake Deprecation Warning at extras/apps/alf/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/alf CMake Deprecation Warning at extras/apps/breakpoint_calculator/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/breakpoint_calculator CMake Deprecation Warning at extras/apps/bs_tools/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/bs_tools CMake Deprecation Warning at extras/apps/fx_tools/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/fx_tools CMake Deprecation Warning at extras/apps/gustaf/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/gustaf CMake Deprecation Warning at extras/apps/insegt/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/insegt CMake Deprecation Warning at extras/apps/mason2/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/mason2 CMake Deprecation Warning at extras/apps/ngs_roi/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring sandbox/jagla/apps/ngs_roi CMake Deprecation Warning at extras/apps/param_chooser/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/param_chooser CMake Deprecation Warning at extras/apps/razers3/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/razers3 -- Performing Test CXX11_FOUND -- Performing Test CXX11_FOUND - Success -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 -- Looking for BZ2_bzCompressInit in -L/usr/lib64 -lbz2 - found CMake Deprecation Warning at extras/apps/rep_sep/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/rep_sep CMake Deprecation Warning at extras/apps/searchjoin/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/searchjoin CMake Deprecation Warning at extras/apps/seqan_flexbar/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/seqan_flexbar CMake Deprecation Warning at extras/apps/sgip/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/sgip CMake Deprecation Warning at extras/apps/variant_comp/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring extras/apps/variant_comp -- Configuring docs CMake Deprecation Warning at docs/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring manual CMake Deprecation Warning at manual/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Could NOT find Sphinx (missing: SPHINX_EXECUTABLE) -- Sphinx not found, not building sphinx manual as a test. -- Configuring sandbox CMake Deprecation Warning at sandbox/CMakeLists.txt:9 (cmake_minimum_required): Compatibility with CMake < 2.8.12 will be removed from a future version of CMake. Update the VERSION argument value or use a ... suffix to tell CMake that the project does not need compatibility with older versions. -- Configuring util/py_lib -- Python nosetests ('import nose' failed), cannot add tests for seqan.dox -- Found Java: /usr/bin/java (found version "17.0.6") -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_SKIP_INSTALL_RPATH SEQAN_APP_VERSION SHARE_INSTALL_PREFIX SYSCONF_INSTALL_DIR -- Build files have been written to: /builddir/build/BUILD/seqan-1.4.2/build/Release + make -j1 all /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Building CXX object core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/dfi/CMakeFiles/dfi.dir/dfi.cpp.o -MF CMakeFiles/dfi.dir/dfi.cpp.o.d -o CMakeFiles/dfi.dir/dfi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:274:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 274 | struct LessSubstringEnd : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:298:27: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 298 | struct LessRange : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:315:25: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 315 | struct LessLex : public binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = long unsigned int; TEndPos = long unsigned int; TSize = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:1871:32: required from 'typename seqan::Size > >::Type seqan::_wotdEvaluate(const Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = TopDown >; typename Size > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:800:34: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = Dfi; TSpec = ParentLinks; TDfsOrder = Preorder_; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexWotd > >; TSpec = ParentLinks]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:1977:17: required from 'void seqan::goBegin(Iter, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = IndexWotd >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:537:9: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = unsigned char; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:847:68: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinFreq; TPred = PredMaxFreq; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinFreq; TPred = PredMaxFreq; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:854:69: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:855:65: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinSupp; TPred = PredEmerging; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinSupp; TPred = PredEmerging; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinSupp; TPred = PredEmerging; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:856:59: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = unsigned char; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:861:71: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:862:67: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'typename seqan::Size, seqan::IndexWotd > > >::Type seqan::_sortFirstWotdBucket(Index, IndexWotd > >&) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; typename Size, IndexWotd > > >::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2021:31: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:302:66: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 302 | *(saBeg + (*(boundBeg + ord))++) = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In instantiation of 'TSize seqan::_sortWotdBucket(Index, IndexWotd > >&, TBeginPos, TEndPos, TSize) [with TText = String, Alloc<> >; TSpec = Owner<>; TPredHull = PredMinAllSupp; TPred = PredEntropy; TBeginPos = int; TEndPos = long unsigned int; TSize = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:2024:26: required from 'void seqan::_wotdCreateFirstLevel(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:615:24: required from 'bool seqan::indexCreate(Index > >&, WotdDir, Default) [with TText = StringSet, Alloc<> >, Owner<> >; TPredHull = PredMinAllSupp; TPred = PredEntropy; WotdDir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexWotd >; TFibre = FibreDir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:363:15: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = Dfi]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexWotd > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:536:8: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinAllSupp; TPred = PredEntropy; TAlphabet = seqan::SimpleType; TParamPredHull = double; TParamPred = double; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:863:61: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:448:111: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 448 | *(saBeg + (*(boundBeg + ordValue(*(itText + getSeqOffset(lPos)))))++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:451:82: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 451 | *(saBeg + index.sentinelBound++) = *itSA; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:848:64: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:257:13: required from 'bool loadDatasets(TSequences&, const TFileNames&, TDatasets&) [with TSequences = seqan::StringSet, seqan::Alloc<> >, seqan::Owner<> >; TFileNames = std::vector >; TDatasets = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:504:19: required from 'int runDFI(const TFileNames&, TParamPredHull, TParamPred, bool, const DFIOptions&) [with TPredHull = PredMinFreq; TPred = PredMaxFreq; TAlphabet = seqan::SimpleType; TParamPredHull = seqan::String >; TParamPred = seqan::String >; TFileNames = std::vector >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:849:58: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:845:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 845 | switch (options.alphabet) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:851:17: note: here 851 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:852:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 852 | switch (options.alphabet) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi/dfi.cpp:858:17: note: here 858 | case 2: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 1%] Linking CXX executable ../../../bin/dfi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi && /usr/bin/cmake -E cmake_link_script CMakeFiles/dfi.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/dfi.dir/dfi.cpp.o -o ../../../bin/dfi -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Built target dfi make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Building CXX object core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/compute_gain.dir/compute_gain.cpp.o -MF CMakeFiles/compute_gain.dir/compute_gain.cpp.o.d -o CMakeFiles/compute_gain.dir/compute_gain.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:2: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:10: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Stats*; TParam = Stats]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23: required from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Stats*; TSource1 = Stats*; TSource2 = Stats*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Stats; TValueTarget = Stats]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Stats; TValueTarget = Stats]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Stats; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:843:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 97 | struct Stats | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:97:8: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> > >::Align(const seqan::Align, seqan::Alloc<> > >&)' is deprecated [-Wdeprecated-copy] 97 | struct Stats | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:5: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'Stats::Stats(const Stats&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> > >; TValue = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> > >; TValue = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:1032:20: required from 'typename seqan::EnableIf::Type, seqan::Tag >::Type, typename seqan::IsSameType::Type, seqan::Tag >::Type>::Type, int>::Type seqan::read2(StringSet&, StringSet&, RecordReader >&, const TTag&) [with TIdString = String >; TIdSpec = Owner<>; TSeqString = String, Alloc<> >; TSeqSpec = Owner<>; TFile = std::basic_fstream; TSpec = void; TTag = Tag; typename EnableIf::Type, Tag >::Type, typename IsSameType::Type, Tag >::Type>::Type, int>::Type = int; typename Or::Type, Tag >::Type, typename IsSameType::Type, Tag >::Type>::Type = True; typename IsSameType::Type, Tag >::Type = False; typename RemoveConst_::Type = Tag; typename IsSameType::Type, Tag >::Type = True]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/compute_gain.cpp:809:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 3%] Linking CXX executable ../../../bin/compute_gain cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/compute_gain.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/compute_gain.dir/compute_gain.cpp.o -o ../../../bin/compute_gain -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Built target compute_gain make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Building CXX object core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona.dir/fiona.cpp.o -MF CMakeFiles/fiona.dir/fiona.cpp.o.d -o CMakeFiles/fiona.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1687 | struct LessOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1705 | struct LessPositionOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4212 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4215 | Dna5String tmp; | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4235 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4238 | double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4413 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4416 | if (options.errorrate != 0 && options.wovsum != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4461 | if (options.verbosity >= 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 4463 | SEQAN_PROTIMESTART(search); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4684 | for (unsigned i = 0; i < length(store.readSeqStore); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4689 | TFionaQgramIndex qgramIndex(prefixes); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4852 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4854 | if (inTerm && options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5027 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5032 | resize(store.readSeqStore, readCount); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5479 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5483 | bool autoCycles = (options.cycles == 0 || options.cycles == 1000); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5486 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 5489 | SEQAN_PROTIMESTART(correction); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5495 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5497 | if (!loadReadsNoNames(store, options.inputFilename, options)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5561 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5563 | options.autolevel = (options.fromLevel <= 1); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5671 | if (res != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5674 | if (options.verbosity >= 1 && options.cycles > 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag) [with TSA = String >, Alloc<> >; TString = Segment, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<10> >; TDir = String >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 445 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 472 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16: required from 'typename seqan::Suffix::Type seqan::suffix(StringSet&, const TPosition&) [with TString = String, Alloc<> >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = long unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 350 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/parallel/compiletime_settings.h:33, from /usr/include/c++/13/parallel/parallel.h:37, from /usr/include/c++/13/parallel/base.h:40, from /usr/include/c++/13/parallel/algobase.h:40, from /usr/include/c++/13/bits/stl_algobase.h:2229, from /usr/include/c++/13/string:51: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 4%] Linking CXX executable ../../../bin/fiona cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona.dir/fiona.cpp.o -o ../../../bin/fiona -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Built target fiona make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Building CXX object core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/g++ -DFIONA_ILLUMINA -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/fiona/CMakeFiles/fiona_illumina.dir/fiona.cpp.o -MF CMakeFiles/fiona_illumina.dir/fiona.cpp.o.d -o CMakeFiles/fiona_illumina.dir/fiona.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:119: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:103: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1687:34: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1687 | struct LessOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1705:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1705 | struct LessPositionOverlap : public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4212:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4212 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4215:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4215 | Dna5String tmp; | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4235:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4235 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4238:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4238 | double experrreads = expectedValueTheoretical(options.expectedTheoretical, readLengthHist, options.genomeLength, options.errorrate); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4413:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4413 | if (options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4416:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4416 | if (options.errorrate != 0 && options.wovsum != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4461:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4461 | if (options.verbosity >= 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:116: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4463:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 4463 | SEQAN_PROTIMESTART(search); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4684:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 4684 | for (unsigned i = 0; i < length(store.readSeqStore); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4689:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 4689 | TFionaQgramIndex qgramIndex(prefixes); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4852:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 4852 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4854:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 4854 | if (inTerm && options.verbosity >= 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5027:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5027 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5032:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5032 | resize(store.readSeqStore, readCount); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5479:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5479 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5483:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5483 | bool autoCycles = (options.cycles == 0 || options.cycles == 1000); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5486:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5486 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/profiling.h:81:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 81 | #define SEQAN_PROTIMESTART(a) _proFloat a = sysTime() | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5489:9: note: in expansion of macro 'SEQAN_PROTIMESTART' 5489 | SEQAN_PROTIMESTART(correction); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5495:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5495 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5497:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5497 | if (!loadReadsNoNames(store, options.inputFilename, options)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5561:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5561 | if (options.verbosity >= 1) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5563:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5563 | options.autolevel = (options.fromLevel <= 1); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5671:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 5671 | if (res != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5674:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 5674 | if (options.verbosity >= 1 && options.cycles > 1) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:132: /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints, Tag) [with TSA = String >, Alloc<> >; TString = Segment, Alloc<> >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<10> >; TDir = String >; TBucketMap = Nothing; TWithConstraints = True; TStepSize = long unsigned int; TParallelTag = Parallel_]': /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4761:30: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:438:61: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:445:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 445 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/index_qgram_parallel.h:472:65: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 472 | sa[atomicPostInc(*bktPtr, parallelTag)] = localPos; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = unsigned int; T2 = short unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:754:16: required from 'typename seqan::Suffix::Type seqan::suffix(StringSet&, const TPosition&) [with TString = String, Alloc<> >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4918:43: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:127: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4686:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2774:10: required from 'void seqan::goNextImpl(Iter > > >&, VSTreeIteratorTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = Preorder; THideEmptyEdges = True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2052:13: required from 'void seqan::goNext(Iter >&, TTraits) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >; TTraits = Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2047:9: required from 'void seqan::goNext(Iter >&) [with TIndex = Index, Alloc<> >, Owner<> >, IndexSa<> >; TSpec = TopDown >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3526:19: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >*>, seqan::InfixSegment>*; TParam = seqan::Segment >*>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >*>, InfixSegment>*; TParam = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >*>, seqan::InfixSegment>, seqan::Array<4> >; TValue = const seqan::Segment >*>, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >*>, InfixSegment>; TTargetSpec = Array<4>; TValue = Segment >*>, InfixSegment>; TExpand = TagLimit_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >*>, InfixSegment>, Array<4> >; TValue = Segment >*>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:3625:32: required from 'void traverseAndSearchCorrections(TTreeIterator, TFragmentStore&, seqan::String&, seqan::String&, FionaOptions&, seqan::Tag, unsigned int, FionaResources&) [with int LOOP_LEVEL = -1; TTreeIterator = seqan::Iter, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >, seqan::VSTree > > >; TFragmentStore = seqan::FragmentStore; TCorrections = CorrectionIndelPos; TValueId = unsigned int; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4944:41: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >*>, seqan::InfixSegment>::Segment(const seqan::Segment >*>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >*>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::Range >*>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = long unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:842:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:129: /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h: In instantiation of 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:350:15: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 350 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = short unsigned int; TEndPosition = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:1958:22: required from 'unsigned int applyReadErrorCorrections(const seqan::String&, seqan::String&, TReadStore&, FionaOptions&) [with TCorrection = CorrectionIndelPos; TValue = unsigned int; TReadStore = seqan::FragmentStore]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5019:46: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = Range >*>; TText = StringSet, Alloc<> >, Owner<> >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = Range >*>; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = Range >*>; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:349:104: required from 'void seqan::assign(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/sequence/iterator_range.h:359:11: required from 'void seqan::operator<<(Range&, Pipe&) [with TIterator = Pair >*; TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TPipeSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> >, seqan::Owner<> > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = short unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Owner<> >; TSpec = IndexSa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/../../extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc<> >, Owner<> >; TIndexSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:422:16: required from 'seqan::Iter > > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc<> >, seqan::Owner<> >, seqan::IndexSa<> >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:4925:24: required from 'unsigned int correctReads(TFragmentStore&, FionaOptions&, seqan::Tag) [with TFragmentStore = seqan::FragmentStore; TAlgorithm = FionaPoisson_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:5592:44: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> >, Owner<> > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona/fiona.cpp:121: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/parallel/compiletime_settings.h:33, from /usr/include/c++/13/parallel/parallel.h:37, from /usr/include/c++/13/parallel/base.h:40, from /usr/include/c++/13/parallel/algobase.h:40, from /usr/include/c++/13/bits/stl_algobase.h:2229, from /usr/include/c++/13/string:51: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 6%] Linking CXX executable ../../../bin/fiona_illumina cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona && /usr/bin/cmake -E cmake_link_script CMakeFiles/fiona_illumina.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fiona_illumina.dir/fiona.cpp.o -o ../../../bin/fiona_illumina -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 6%] Built target fiona_illumina make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Building CXX object core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/mason/CMakeFiles/mason.dir/mason.cpp.o -MF CMakeFiles/mason.dir/mason.cpp.o.d -o CMakeFiles/mason.dir/mason.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String >; TSpec = AnchorGaps, Alloc<> > >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = True]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1565:36: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19: required from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = String, Alloc<> >; TSize = long unsigned int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:478:12: required from 'int writeRandomSequence(TRNG&, size_t, const seqan::CharString&, const TOptions&) [with TRNG = seqan::Rng; TOptions = Options >; size_t = long unsigned int; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:568:38: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1385:31: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:700:14: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11: required from 'void seqan::insert(String >&, TPos, const TString&) [with TValue = SimpleType; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String >; TPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19: required from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = String, Alloc<> >; TSize = unsigned int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1008:12: required from 'void buildHaplotype(seqan::StringSet, seqan::Journaled > > >&, seqan::FragmentStore&, seqan::String >&, TRNG&, const Options&) [with TRNG = seqan::Rng]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1322:27: required from 'int simulateReadsMain(seqan::FragmentStore&, TRNG&, const TOptions&, const ModelParameters&) [with TRNG = seqan::Rng; TReadsTag = seqan::Tag; TOptions = Options >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:608:28: required from 'int simulateReads(TOptions, seqan::CharString, const TReadsTypeTag&) [with TOptions = Options >; TReadsTypeTag = seqan::Tag; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:116:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence_journaled/sequence_journaled.h:745:11: required from 'void seqan::insert(String >&, TPos, const TString&) [with TValue = SimpleType; THostSpec = Alloc<>; TJournalSpec = SortedArray; TBufferSpec = Alloc<>; TString = String >; TPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:944:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tempbuf.h:59, from /usr/include/c++/13/bits/stl_algo.h:69, from /usr/include/c++/13/algorithm:61, from /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.cpp:37: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551456' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Alloc<> >; TValue = ReadSimulationInstruction >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ReadSimulationInstruction >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]' at /builddir/build/BUILD/seqan-1.4.2/core/apps/mason/mason.h:1193:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551408' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'int buildReadSimulationInstruction(seqan::String >&, TRNG&, const unsigned int&, const seqan::StringSet, THaplotypeSpec> >&, const seqan::String&, const size_t&, bool, const ModelParameters&, const Options&) [with TReadsTag = seqan::Tag<_LS454Reads>; TRNG = seqan::Rng; THaplotypeSpec = seqan::Alloc<>]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 8%] Linking CXX executable ../../../bin/mason cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason.dir/mason.cpp.o -o ../../../bin/mason -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Built target mason make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/micro_razers.cpp.o -MF CMakeFiles/micro_razers.dir/micro_razers.cpp.o.d -o CMakeFiles/micro_razers.dir/micro_razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:25: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:662:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 662 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:691:49: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 691 | struct LessRNoEdistHLen : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:747:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 747 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:779:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 779 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:30, from /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:38: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, UngappedShape<0> >; TDir = String >; TValue = unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, UngappedShape<0> >; TDir = String >; TValue = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobalHamming) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobalHamming = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1378:35: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1378 | return matchVerify(m,inf,rseqNo,readSet,options,MicroRNA()); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1276:40: note: initializing argument 2 of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, const RazerSOptions&, MicroRNA) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TSpec = RazerSSpec<>]' 1276 | Segment inf, // potential match genome region | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, OneGappedShape>; TDir = String >; TValue = unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, OneGappedShape>; TDir = String >; TValue = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, GappedShape > >; TDir = String >; TValue = unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1911:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, TStringSet&, TShape&, TDir&, Nothing, TWithConstraints, TValue, MicroRNA) [with TSA = String >, Alloc<> >; TStringSet = StringSet >, Owner > >; TShape = Shape, GappedShape > >; TDir = String >; TValue = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1922:25: required from 'void seqan::createQGramIndex(TIndex&, TValue, MicroRNA) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2007:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1845:71: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1845 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1847:68: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1847 | sa[dir[hash(shape, itText) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1855:79: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1855 | if (dir[h] != (TSize)-1) sa[dir[h]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1857:80: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1857 | sa[dir[hashNext(shape, itText) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1490 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:570:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1490:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1491:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1716:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1459:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1474:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1492:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:612:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1497:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:182:25: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/razers.h:562:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:158:19: required from 'int mapMicroRNAReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:537:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/../razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers/micro_razers.cpp:456:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 9%] Building CXX object core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/micro_razers/CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -MF CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o.d -o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp [ 9%] Linking CXX executable ../../../bin/micro_razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/micro_razers.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/micro_razers.dir/micro_razers.cpp.o CMakeFiles/micro_razers.dir/__/razers/param_tabs.cpp.o -o ../../../bin/micro_razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 9%] Built target micro_razers make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Building CXX object core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/pair_align/CMakeFiles/pair_align.dir/pair_align.cpp.o -MF CMakeFiles/pair_align.dir/pair_align.cpp.o.d -o CMakeFiles/pair_align.dir/pair_align.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:19: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:18: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment, Alloc<> >, Dependent > >, void, const Tag >; TNames = StringSet > >; FastaFormat = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:262:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment, Alloc<> >, Dependent > >, void, const Tag >; TNames = StringSet > >; FastaFormat = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:298:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = void; TSpec = const Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:897:22: required from 'void seqan::write(TFile&, const Graph&, const TNames&, FastaFormat) [with TFile = _IO_FILE*; TSpec = Alignment, Alloc<> >, Dependent > >, void, const Tag >; TNames = StringSet > >; FastaFormat = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:131:14: required from 'void pairwise_align(const TScore&, TSeqFile&, TMethod, TDiag, TDiag, bool, TOutputFormat, TOutfile&) [with TAlphabet = seqan::SimpleType; TAlignConfig = seqan::AlignConfig; TScore = seqan::Score >; TSeqFile = std::__cxx11::basic_string; TMethod = unsigned int; TDiag = int; TOutputFormat = int; TOutfile = std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:215:76: required from 'void _initAlignParams(const Options&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align/pair_align.cpp:316:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >; TValue = String >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = String >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 11%] Linking CXX executable ../../../bin/pair_align cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align && /usr/bin/cmake -E cmake_link_script CMakeFiles/pair_align.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/pair_align.dir/pair_align.cpp.o -o ../../../bin/pair_align -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target pair_align make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -MF CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o.d -o CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:27: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:120:16: required from 'seqan::String >::String(seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/prepare_sam.cpp:80:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 12%] Linking CXX executable ../../../bin/rabema_prepare_sam cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_prepare_sam.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_prepare_sam.dir/prepare_sam.cpp.o -o ../../../bin/rabema_prepare_sam -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Built target rabema_prepare_sam make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Building CXX object core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -MF CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o.d -o CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:31: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 624 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:411:41: required from 'void buildErrorCurvePoints(seqan::String&, int&, TContigSeq&, size_t, bool, TReadSeq&, size_t, size_t, const TReadNames&, bool, const TPatternSpec&) [with TContigSeq = seqan::String, seqan::Alloc<> >; TReadSeq = seqan::String, seqan::Alloc<> >; TPatternSpec = seqan::Tag; TReadNames = seqan::StringSet > >; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:901:34: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:869:29: required from 'int matchesToErrorFunction(TErrorCurves&, seqan::String&, TStreamOrReader&, seqan::BamIOContext > > >&, seqan::StringSet > >&, const seqan::StringSet > >&, const seqan::FaiIndex&, const BuildGoldStandardOptions&, const TPatternSpec&, const TFormat&) [with TPatternSpec = seqan::Tag; TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TFormat = seqan::Tag; TErrorCurves = std::map >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_build_gold_standard.cpp:1252:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 14%] Linking CXX executable ../../../bin/rabema_build_gold_standard cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_build_gold_standard.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_build_gold_standard.dir/rabema_build_gold_standard.cpp.o -o ../../../bin/rabema_build_gold_standard -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Built target rabema_build_gold_standard make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -MF CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o.d -o CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, String&) [with TValue = unsigned int; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:635:22: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1827 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1838 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1859 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1311:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 624 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:611:51: required from 'int benchmarkReadResult(RabemaStats&, const seqan::String&, const seqan::BamIOContext > > >&, const seqan::String&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, const RefIdMapping&, const RabemaEvaluationOptions&, const TPatternSpec&, bool, bool) [with TPatternSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:976:42: required from 'int compareAlignedReadsToReference(RabemaStats&, TStreamOrReader&, seqan::BamIOContext > > >&, const seqan::StringSet > >&, const seqan::NameStoreCache > > >&, const seqan::StringSet, seqan::Alloc<> > >&, seqan::RecordReader&, const RabemaEvaluationOptions&, const TPatternSpec&, const TFormat&) [with TStreamOrReader = seqan::RecordReader, seqan::SinglePass >; TGsiStream = seqan::Stream >; TGsiStreamSpec = seqan::SinglePass; TPatternSpec = seqan::Tag; TFormat = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/rabema_evaluate.cpp:1402:49: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'seqan::IntervalTree::IntervalTree(const seqan::IntervalTree&)' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::IntervalTree*; TParam = seqan::IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = IntervalTree*; TParam = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = IntervalTree*; TSource1 = IntervalTree*; TSource2 = IntervalTree*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'seqan::IntervalTree::IntervalTree(const seqan::IntervalTree&)' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:488:7, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::IntervalTree*; TParam = seqan::IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = IntervalTree*; TParam = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = IntervalTree*; TSource1 = IntervalTree*; TSource2 = IntervalTree*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = IntervalTree; TValueTarget = IntervalTree]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = IntervalTree; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 16%] Linking CXX executable ../../../bin/rabema_evaluate cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_evaluate.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_evaluate.dir/rabema_evaluate.cpp.o -o ../../../bin/rabema_evaluate -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_evaluate make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Building CXX object core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/rabema/CMakeFiles/rabema_do_search.dir/do_search.cpp.o -MF CMakeFiles/rabema_do_search.dir/do_search.cpp.o.d -o CMakeFiles/rabema_do_search.dir/do_search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:3: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:11: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:13: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:105:10: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 105 | std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:7: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:88:7: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:254:100: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:52: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, InfixSegment>; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:507:97: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(ModifiedString >&, Tag) [with THost = Segment, InfixSegment>; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, InfixSegment>, AdaptorIterator > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/curve_smoothing.h:257:91: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::InfixSegment>; TIterator = WeightedMatch*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:23:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h: In instantiation of 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 624 | return ModifiedString(host); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:624:9: required from 'seqan::ModifiedString > seqan::reverseString(THost&) [with THost = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:218:55: required from 'static void seqan::FindBeginImpl_ >::_findBeginInit(TPattern&, TNeedle&) [with TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Myers >; TNeedle = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THasState = seqan::True]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_begin.h:336:62: required from 'void seqan::_findBeginInit(TPattern&, TNeedle&) [with TPattern = Pattern, Alloc<> >, InfixSegment>, Myers >; TNeedle = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:591:16: required from 'void seqan::_patternFirstInit(Pattern >&, TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:723:19: required from 'void seqan::setHost(Pattern >&, const TNeedle2&) [with TNeedle = Segment, Alloc<> >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = Myers; TNeedle2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:497:10: required from 'seqan::Pattern >::Pattern(const TNeedle2&, int) [with TNeedle2 = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TNeedle = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::FindInfix; THasState = seqan::True; TFindBeginPatternSpec = seqan::Myers]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/find_myers_ukkonen_reads.h:108:9: required from 'seqan::Pattern >::Pattern(TNeedle2&, int) [with TNeedle2 = seqan::String, seqan::Alloc<> >; TNeedle = seqan::String, seqan::Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:27:89: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema/do_search.cpp:2: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 16%] Linking CXX executable ../../../bin/rabema_do_search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema && /usr/bin/cmake -E cmake_link_script CMakeFiles/rabema_do_search.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rabema_do_search.dir/do_search.cpp.o -o ../../../bin/rabema_do_search -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_do_search make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/razers.cpp.o -MF CMakeFiles/razers.dir/razers.cpp.o.d -o CMakeFiles/razers.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:715:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 715 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:747:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 747 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:779:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 779 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:30, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:55: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:237:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 237 | struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:548:10: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 548 | else if (endsWith(tmp, ".gff")) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:551:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 551 | if (isSet(parser, "shape")) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:585:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 585 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:587:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 587 | if ((options.minClippedLen < 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1490 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1736:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1490 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:211:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1490:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1491:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2306:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1718:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2309:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:391:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1685:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1712:17: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2068:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2233:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1474:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1492:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31: required from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42: required from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15: required from 'seqan::String >& seqan::String >::operator=(const TSource&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/outputFormat.h:918:13: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:241:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:1497:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:508:40: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:199:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:178:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2295:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:444:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2298:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:410:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers_matepairs.h:797:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2230:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.h:2292:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:218:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:699:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/razers.cpp:679:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 17%] Building CXX object core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers/CMakeFiles/razers.dir/param_tabs.cpp.o -MF CMakeFiles/razers.dir/param_tabs.cpp.o.d -o CMakeFiles/razers.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers/param_tabs.cpp [ 19%] Linking CXX executable ../../../bin/razers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers.dir/razers.cpp.o CMakeFiles/razers.dir/param_tabs.cpp.o -o ../../../bin/razers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Built target razers make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/razers.cpp.o -MF CMakeFiles/razers2.dir/razers.cpp.o.d -o CMakeFiles/razers2.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:488:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 488 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:535:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:583:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 583 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:630:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 630 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:127:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 127 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:169:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 169 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:51: /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:228:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 228 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp: In function 'seqan::ArgumentParser::ParseResult extractOptions(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions<>&, seqan::ParamChooserOptions&, seqan::CharString&, const seqan::ArgumentParser&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:492:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 492 | if (!isSet(parser, "read-naming") && options.outputFormat == 4) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:495:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 495 | if (isSet(parser, "shape")) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:529:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 529 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:532:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 532 | options.errorRate = (100.0 - options.errorRate) / 100.0; | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, Myers > >, Pattern >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, Myers > >, Pattern >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, Myers > >, Pattern >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1203:15: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1000:22: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1000 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:57: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1068 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1128:41: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1128 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1097:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Triple, void>, AlignQualityStoreElement, void>; TSource = Triple, void>, AlignQualityStoreElement, void>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_dequeue.h:344:8: required from 'void seqan::pushBack(Dequeue&, const TValue&) [with TValue = Triple, void>, AlignQualityStoreElement, void>; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>& seqan::Triple, void>, seqan::AlignQualityStoreElement, void>::operator=(const seqan::Triple, void>, seqan::AlignQualityStoreElement, void>&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement, void>; T3 = seqan::AlignQualityStoreElement; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:201:9: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1049:21: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1068:22: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1518:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1521:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String >; TSpec = AnchorGaps, Alloc<> > >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = void; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = False]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1053:48: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:434:32: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1190:32: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1015:13: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1069:22: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = std::basic_ofstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/outputFormat.h:1092:9: required from 'void seqan::dumpMatches(FragmentStore&, StringSet > >&, String&, CharString, CharString, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:220:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:481:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1073:16: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, TReadSet&, SwiftSemiGlobal) [with TMatchVerifier = MatchVerifier, RazerSOptions<>, String >, InfixSegment>, Myers >, Alloc<> >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > > >; TGenome = String, Alloc<> >; TReadSet = StringSet >, InfixSegment>, Owner<> >; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:542:22: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1515:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:194:17: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:167:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1507:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:477:13: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1199:13: required from 'void seqan::mapSingleReads(TFragmentStore&, TGenome&, unsigned int, Pattern >&, TPreprocessing&, char, TRazerSOptions&) [with TFragmentStore = FragmentStore<>; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, Myers > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1321:19: required from 'int seqan::mapSingleReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1459:24: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1510:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 22; unsigned int BITSIZE2 = 10]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23: required from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Segment >, InfixSegment>*; TSource1 = Segment >, InfixSegment>*; TSource2 = Segment >, InfixSegment>*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Segment >, InfixSegment>; TValueTarget = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Segment >, InfixSegment>; TValueTarget = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Segment >, InfixSegment>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:1435:18: required from 'typename seqan::Size >::Type seqan::resize(StringSet&, TSize, Tag) [with TString = Segment >, InfixSegment>; TSpec = Owner<>; TSize = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:731:8: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:460:16: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:617:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple, void>, AlignQualityStoreElement, void>; TSource = Triple, void>, AlignQualityStoreElement, void>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple, void>, AlignQualityStoreElement, void>; TSource = Triple, void>, AlignQualityStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple, void>, AlignQualityStoreElement, void>*; TSource1 = Triple, void>, AlignQualityStoreElement, void>*; TSource2 = Triple, void>, AlignQualityStoreElement, void>*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple, void>, AlignQualityStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple, void>, AlignQualityStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple, void>, AlignQualityStoreElement, void>*; TSource1 = Triple, void>, AlignQualityStoreElement, void>*; TSource2 = Triple, void>, AlignQualityStoreElement, void>*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:510:14: required from 'void seqan::mapMatePairReads(FragmentStore&, TGenome&, unsigned int, Pattern >&, Pattern >&, TPreprocessing&, TPreprocessing&, char, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGenome = String, Alloc<> >; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TPreprocessing = String >, InfixSegment>, Myers >, Alloc<> >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers_matepairs.h:831:21: required from 'int seqan::mapMatePairReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1456:26: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&, const TShape&, Swift) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.h:1504:19: required from 'int seqan::mapReads(FragmentStore&, StringSet > >&, String&, RazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TGNoToFile = Pair >, unsigned int>; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:201:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/razers.cpp:633:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>& seqan::Triple, void>, seqan::AlignQualityStoreElement, void>::operator=(const seqan::Triple, void>, seqan::AlignQualityStoreElement, void>&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple, void>, seqan::AlignQualityStoreElement, void>' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long int; T2 = seqan::AlignedReadStoreElement, void>; T3 = seqan::AlignQualityStoreElement; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 19%] Building CXX object core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/razers2/CMakeFiles/razers2.dir/param_tabs.cpp.o -MF CMakeFiles/razers2.dir/param_tabs.cpp.o.d -o CMakeFiles/razers2.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2/param_tabs.cpp [ 20%] Linking CXX executable ../../../bin/razers2 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers2.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers2.dir/razers.cpp.o CMakeFiles/razers2.dir/param_tabs.cpp.o -o ../../../bin/razers2 -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 20%] Built target razers2 make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Building CXX object core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sak/CMakeFiles/sak.dir/sak.cpp.o -MF CMakeFiles/sak.dir/sak.cpp.o.d -o CMakeFiles/sak.dir/sak.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:64: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:361:63: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment, Alloc<> >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:501:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/write_fasta_fastq.h:379:74: required from 'int seqan::writeRecord(TStream&, const TIdString&, const TSeqString&, const TQualString&, const Fastq&, const SequenceOutputOptions&) [with TStream = std::basic_ostream; TIdString = String >; TQualString = Segment >, InfixSegment>; TSeqString = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:523:36: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sak/sak.cpp:492:45: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 22%] Linking CXX executable ../../../bin/sak cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak && /usr/bin/cmake -E cmake_link_script CMakeFiles/sak.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sak.dir/sak.cpp.o -o ../../../bin/sak -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Built target sak make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Building CXX object core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -MF CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o.d -o CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38: required from 'int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String >; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:155:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/ppc64le-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix/sam2matrix.cpp:38: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 24%] Linking CXX executable ../../../bin/sam2matrix cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix && /usr/bin/cmake -E cmake_link_script CMakeFiles/sam2matrix.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sam2matrix.dir/sam2matrix.cpp.o -o ../../../bin/sam2matrix -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Built target sam2matrix make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Building CXX object core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/samcat/CMakeFiles/samcat.dir/samcat.cpp.o -MF CMakeFiles/samcat.dir/samcat.cpp.o.d -o CMakeFiles/samcat.dir/samcat.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat/samcat.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 25%] Linking CXX executable ../../../bin/samcat cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat && /usr/bin/cmake -E cmake_link_script CMakeFiles/samcat.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/samcat.dir/samcat.cpp.o -o ../../../bin/samcat -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target samcat make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Building CXX object core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -MF CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o.d -o CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:18: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:25: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = long unsigned int; TCargo = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph, Alloc<> >, Dependent > >, long unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = long unsigned int; typename Value::Type = Fragment<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph, Alloc<> >, Dependent > >, long unsigned int, Tag > >; TSequence = String, Alloc<> >; TSetSpec = Dependent >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:229:17: required from 'void seqan::buildAlignmentGraph(String&, Graph >&, FrequencyCounting) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; FrequencyCounting = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:115:21: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2068 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2079 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2100 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:21: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:282:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:302:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_impl_align.h:1892:17: required from 'bool seqan::convertAlignment(const Graph >&, TMatrix&) [with TStringSet = StringSet, Alloc<> >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TMatrix = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_msa.h:145:22: required from 'void seqan::evaluateAlignment(const MsaOptions&) [with TAlphabet = SimpleType; TScore = Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:258:26: required from 'void _initMsaParams(seqan::ArgumentParser&, TScore&) [with TAlphabet = seqan::SimpleType; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee/seqan_tcoffee.cpp:322:34: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 25%] Linking CXX executable ../../../bin/seqan_tcoffee cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_tcoffee.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_tcoffee.dir/seqan_tcoffee.cpp.o -o ../../../bin/seqan_tcoffee -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target seqan_tcoffee make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Building CXX object core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/seqcons/CMakeFiles/seqcons.dir/seqcons.cpp.o -MF CMakeFiles/seqcons.dir/seqcons.cpp.o.d -o CMakeFiles/seqcons.dir/seqcons.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:37, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:23: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'seqan::ArgumentParser::ParseResult parseCommandLine(seqan::ConsensusOptions&, int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:94:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 94 | if (res != seqan::ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:98:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 98 | getOptionValue(consOpt.readsfile, parser, "reads"); | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:240:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 240 | if (res != seqan::ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:244:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 244 | typedef FragmentStore<> TFragmentStore; | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervalsExcludeTouching(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String > > > >; TValue = long unsigned int; TCargo = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:576:34: required from 'void seqan::matchRefinement(TAlignmentString&, StringSet&, TScore&, TOutGraph&, typename Size::Type>::Type, TAnnotation&, Tag) [with TAlignmentString = String >; TAnnotation = bool; TOutGraph = Graph >, Dependent > >, long unsigned int, Tag > >; TSequence = String >; TSetSpec = Dependent >; TScore = long unsigned int; TTagSpec = TagExactRefinement_; typename Size::Type>::Type = long unsigned int; typename Value::Type = Fragment<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:700:17: required from 'void seqan::matchRefinement(TFragmentString&, StringSet&, TOutGraph&) [with TFragmentString = String >; TOutGraph = Graph >, Dependent > >, long unsigned int, Tag > >; TSequence = String >; TSetSpec = Dependent >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:182:17: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, FractionalScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; FractionalScore = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:311:21: required from 'void seqan::buildAlignmentGraph(String&, String&, Graph >&, const TScore&, ReScore) [with TFragment = Fragment<>; TSpec1 = Alloc<>; TScoreValue = int; TSpec2 = Alloc<>; TStringSet = StringSet >, Dependent > >; TCargo = long unsigned int; TSpec = Tag; TScore = Score >; ReScore = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:564:21: required from 'void seqan::consensusAlignment(Graph >&, String >&, const TConfigOptions&) [with TStringSet = StringSet >, Dependent > >; TCargo = void; TSpec = const Tag; TSize = long unsigned int; TConfigOptions = ConsensusOptions]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:278:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2068:26: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2068 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2079:43: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2079 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:2100:51: warning: implicitly-declared 'seqan::IntervalTreeNode > > >& seqan::IntervalTreeNode > > >::operator=(const seqan::IntervalTreeNode > > >&)' is deprecated [-Wdeprecated-copy] 2100 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode > > >' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo > >]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:207:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment >, InfixSegment>; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_realign.h:776:15: required from 'void seqan::reAlign(FragmentStore&, TScore&, TId, TMethod, TBandwidth, bool) [with TSpec = void; TConfig = FragmentStoreConfig; TScore = Score >, Score > > >; TId = long unsigned int; TMethod = int; TBandwidth = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:263:12: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:221:19: required from 'void seqan::getMDString(TMDString&, TGaps1&, TGaps2&) [with TMDString = String >; TGaps1 = Gaps >, AnchorGaps, Alloc<> > > >; TGaps2 = Gaps >, AnchorGaps, Alloc<> > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:475:16: required from 'void seqan::alignAndGetCigarString(TCigar&, TMDString&, TContig&, TReadSeq&, TAlignedRead&, TErrors&, const Nothing&) [with TCigar = String >; TMDString = String >; TContig = ContigStoreElement >, GapAnchor, void>; TReadSeq = String >; TErrors = int; TAlignedRead = AlignedReadStoreElement, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1058:35: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; TAlignFunctor = Nothing; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1210:25: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1239:25: required from 'void seqan::write(TFile&, FragmentStore&, Sam) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:220:8: required from 'int writeOutput(TFragmentStore&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:308:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14: required from 'int seqan::_convertSimpleReadFile(TFile&, FragmentStore&, TFilePath&, bool) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TFilePath = const std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:184:7: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:1545:14: required from 'int seqan::_convertSimpleReadFile(TFile&, FragmentStore&, TFilePath&, bool) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; TFilePath = const std::__cxx11::basic_string]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:166:29: required from 'int loadFiles(TFragmentStore&, TSize&, const seqan::ConsensusOptions&) [with TFragmentStore = seqan::FragmentStore<>; TSize = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons/seqcons.cpp:250:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 564 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here 565 | case 'D': | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'typename seqan::Size::Type seqan::reserve(T&, const TSize&) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2091:19, inlined from 'void seqan::upgmaTree(Graph >&, Graph >&, TTag) [with TValue = double; TSpec1 = Tag; TCargo = double; TSpec2 = Tag; TTag = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:854:9: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::upgmaTree(Graph >&, Graph >&, TTag) [with TValue = double; TSpec1 = Tag; TCargo = double; TSpec2 = Tag; TTag = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:227:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14, inlined from 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Graph > >*; TParam = seqan::Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9, inlined from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Graph > >*; TParam = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28, inlined from 'void seqan::_arrayConstructCopyDefault(TSource1, TSource2, TTarget) [with TTarget = Graph > >*; TSource1 = Graph > >*; TSource2 = Graph > >*]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:605:23, inlined from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, False) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1420:31, inlined from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = Graph > >; TValueTarget = Graph > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Graph > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align/graph_algorithm_refine_exact_iterative.h:227:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_createTreesForAllSequences(String&, String&, TAlignmentString&, StringSet&, TSeqMap&, TValue) [with TGraph = Graph > >; TPropertyMap = String > > > >; TAlignmentString = String >; TSequence = String >; TSetSpec = Dependent >; TValue = long unsigned int; TSeqMap = std::map]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 27%] Linking CXX executable ../../../bin/seqcons cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqcons.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqcons.dir/seqcons.cpp.o -o ../../../bin/seqcons -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Built target seqcons make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Building CXX object core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/snp_store/CMakeFiles/snp_store.dir/snp_store.cpp.o -MF CMakeFiles/snp_store.dir/snp_store.cpp.o.d -o CMakeFiles/snp_store.dir/snp_store.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:32: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:31: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:53: /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:356:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 356 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:405:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 405 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:420:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 420 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:468:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 468 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:481:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 481 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:504:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 504 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:523:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 523 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:545:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 545 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h: In instantiation of 'seqan::Pair::Pair(const T1&, const T2&) [with T1 = unsigned int; T2 = seqan::Segment >, seqan::InfixSegment>; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:5235:46: required from 'void seqan::dumpShortIndelPolymorphismsBatch(TFragmentStore&, TReadCigars&, TGenome&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TGenome = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:997:74: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_base.h:143:53: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 143 | Pair(T1 const & _i1, T2 const & _i2) : i1(_i1), i2(_i2) {} | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4144:36: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1200:28: required from 'typename seqan::Iterator >::Type seqan::iter(const T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1178:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(const T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:450:22: required from 'bool seqan::isGap(const Gaps >&, TPosition) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4505:72: required from 'void seqan::dumpVariantsRealignBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCounts = String >; TReadCigars = StringSet > >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:2564:41: required from 'void seqan::dumpVariantsRealignBatchWrap(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1012:53: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/tokenize.h:943:12: required from 'int seqan::readNChars(TBuffer&, RecordReader&, unsigned int) [with TBuffer = String >; TStream = std::basic_fstream; TPass = SinglePass]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:1004:39: required from 'int seqan::readMatchesFromGFF_Batch(TFile&, TFragmentStore&, TReadCounts&, String >&, StringSet&, TGenome&, TGenomeIdMap&, TSize, TContigPos, TContigPos, TValue&, TOptions&, bool) [with TFile = std::basic_fstream*; TFragmentStore = FragmentStore; TReadCounts = String >; TCigarStr = String >; TGenome = String >; TGenomeIdMap = std::map >, unsigned int>; TContigPos = long int; TSize = unsigned int; TValue = int; TOptions = SNPCallingOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:903:54: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.h:4809:28: required from 'void seqan::dumpSNPsBatch(TFragmentStore&, TReadCigars&, const TReadCounts&, TGenomeName, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TFile&, TOptions&) [with TFragmentStore = FragmentStore; TReadCigars = StringSet > >; TReadCounts = String >; TGenomeName = String >; TFile = std::basic_ofstream; TOptions = SNPCallingOptions<>; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1014:38: required from 'int detectSNPs(seqan::SNPCallingOptions&) [with TSpec = seqan::SNPCallingSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store/snp_store.cpp:1442:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 29%] Linking CXX executable ../../../bin/snp_store cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store && /usr/bin/cmake -E cmake_link_script CMakeFiles/snp_store.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/snp_store.dir/snp_store.cpp.o -o ../../../bin/snp_store -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target snp_store make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Building CXX object core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/splazers/CMakeFiles/splazers.dir/splazers.cpp.o -MF CMakeFiles/splazers.dir/splazers.cpp.o.d -o CMakeFiles/splazers.dir/splazers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:28, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:712:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 712 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:740:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 740 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:766:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 766 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:784:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:806:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:51: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:126:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 126 | struct LessGPosRNo : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 198 | if (skipWhitespaces(reader) != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 201 | int kickout = 0; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 373 | if (pm_options.verbose) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 376 | resize(avg,pm_options.totalN,(TFloat)0.0); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 934 | if (value(reader) == 'e') | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 938 | bool atLeastOneFound = false; | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:59: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:525:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | struct LessPairErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:564:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 564 | for (unsigned i = 0; i < length(readFileNames); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:567:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 567 | if(length(readFileNames) == 2) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:615:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 615 | if ((getArgumentValueCount(parser, 1) == 0) && (stop = true)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:617:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 617 | if ((options.minClippedLen < 0) && (stop = true)) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = const seqan::Segment >, seqan::InfixSegment>; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 161 | _host(std::forward(host)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 165 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:62: /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 684 | TGenomeInfix oriInf = inf; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 692 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestPrefix; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2618:20: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:684:22: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 684 | TGenomeInfix oriInf = inf; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 692 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1466 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2036:19: required from 'int seqan::mapSingleReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2183:24: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1466 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = const seqan::Segment >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = const seqan::Segment >, seqan::InfixSegment>&; THost = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = const seqan::Segment >, seqan::InfixSegment>; typename seqan::RemoveReference::Type = seqan::ModifiedString >, seqan::InfixSegment>, seqan::ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_shortcuts.h:584:9: required from 'typename seqan::ReverseComplementString::Type seqan::reverseComplementString(const THost&) [with THost = Segment >, InfixSegment>; typename ReverseComplementString::Type = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:40: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:13: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:516:9: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2446:16: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:692:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(const Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:537:26: required from 'void seqan::setHost(ModifiedString&, const THost&) [with THost = Segment >, InfixSegment>; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:696:10: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:477:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 477 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3101:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3103:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1875:77: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1466:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2256:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2259:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >; TString = char [1]; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ofstream; THost = ModifiedString >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder >, InfixSegment>, Swift > > >; typename Parameter_::Type>::Type = Segment >, InfixSegment>; typename Haystack::Type = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25: required from 'seqan::Pair > >::Type> seqan::positionRange(Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 801 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(const Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1171:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(const TObject&) [with TObject = Finder >, InfixSegment>, Swift > > >; typename Parameter_::Type>::Type = Segment >, InfixSegment>; typename Haystack::Type = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1628:38: required from 'seqan::Pair > >::Type> seqan::positionRange(const Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1639:25: required from 'seqan::Pair > >::Type> seqan::positionRange(Finder >&) [with THaystack = Segment >, InfixSegment>; TSpec = Tag >; typename Position > >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2516:26: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:801:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 801 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1823:41: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:48: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1881:34: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2410:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2411:33: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:670:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:693:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:1735:14: required from 'bool seqan::combineLeftRight(TMatch&, TMatch&, TRead&, TGenome&, RazerSOptions&, char, SwiftSemiGlobal) [with TMatch = ReadMatch; TRead = const Segment >, InfixSegment>; TGenome = String >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:664:32: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = String >; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1450:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1468:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1128:31: required from 'static void seqan::AssignString_::assign_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1176:42: required from 'void seqan::assign(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1108:11: required from 'void seqan::assign(String&, const TSource&) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:173:15: required from 'seqan::String >& seqan::String >::operator=(const TSource&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1102:13: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:704:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal, TSufPrefSpec) [with TMatch = ReadMatch; TGenome = String >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec<>; TSufPrefSpec = LongestSuffix; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2570:21: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator::Type>::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1792:33: required from 'bool seqan::_nextNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1912:37: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = Segment, Alloc<> >, InfixSegment>; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, InfixSegment>, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:1473:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, Myers > >; TSpec = RazerSSpec<>; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:775:21: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2253:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = const Segment >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:185:61: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >; TString = char [1]; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ofstream; THost = ModifiedString >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:626:22: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::begin(ModifiedString&, Tag) [with THost = const Segment >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:497:103: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::end(const ModifiedString >&, Tag) [with THost = ModifiedString >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:186:63: required from 'void seqan::_streamWriteSeq(TTarget&, const TSource&, True) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:219:17: required from 'void seqan::_streamWrite(TTarget&, const TSource&) [with TTarget = std::basic_ofstream; TSource = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:282:14: required from 'void seqan::write(TFile&, const TData&, const TString&, Raw) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >; TString = char [1]; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_raw.h:343:7: required from 'void seqan::write(TFile&, const TData&) [with TFile = std::basic_ofstream; TData = ModifiedString >, InfixSegment>, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:807:10: required from 'TStream& seqan::operator<<(TStream&, const ModifiedString&) [with TStream = std::basic_ofstream; THost = ModifiedString >, InfixSegment>, ModView > > >; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/outputFormat.h:1589:14: required from 'void seqan::dumpMatches(TMatches&, const TGenomeNames&, StringSet > >&, std::map, unsigned int> >&, const TReads&, const TReadRegions&, TCounts&, const TReadNames&, CharString, CharString, RazerSOptions&) [with TMatches = String >; TGenomeNames = StringSet > >; TReads = StringSet >, Owner > >; TReadRegions = String > > >; TReadNames = StringSet > >; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:305:14: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:508:14: required from 'bool seqan::loadReads(TReadSet&, TNameSet&, const char*, const char*, TRazerSOptions&) [with TReadSet = StringSet >, Owner > >; TNameSet = StringSet > >; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:204:17: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3066:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, OneGappedShape>; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3068:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = Segment >, InfixSegment>; TSpec = Owner<>; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, InfixSegment>, Owner<> >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, InfixSegment>, Owner<> >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2481:13: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, GappedShape > >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3070:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2245:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:717:13: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2248:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: required from 'seqan::Holder >::Holder(const THostValue&) [with TValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THostValue = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_wotd.h:267:4: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:683:16: required from 'void seqan::mapMatePairReads(TMatches&, TGenome&, unsigned int, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, Myers > >; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_matepairs.h:1046:21: required from 'int seqan::mapMatePairReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, const TReadSet_&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2180:26: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2242:19: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:702:22: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2728:25: required from 'void seqan::mapSplicedReads(TMatches&, TGenome&, unsigned int, TOriReadSet&, TReadRegions&, Pattern >&, Pattern >&, TVerifier&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String >; TOriReadSet = StringSet >, Owner > >; TReadIndexL = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TReadIndexR = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:2263:20: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet_&, TReadRegions&, TCounts&, RazerSOptions&, const TShapeL&, const TShapeR&, Swift) [with TMatches = String >; TReadSet_ = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TShapeL = Shape, UngappedShape<0> >; TShapeR = Shape, UngappedShape<0> >; TSwiftSpec = Tag >; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers_spliced.h:3099:27: required from 'int seqan::mapSplicedReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/razers.h:2227:31: required from 'int seqan::mapReads(TMatches&, StringSet > >&, StringSet > >&, std::map, unsigned int> >&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TReadSet = StringSet >, Owner > >; TCounts = String >; TSpec = RazerSSpec<>; TReadRegions = String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:274:22: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::CharString&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers/splazers.cpp:736:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 29%] Linking CXX executable ../../../bin/splazers cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers && /usr/bin/cmake -E cmake_link_script CMakeFiles/splazers.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/splazers.dir/splazers.cpp.o -o ../../../bin/splazers -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target splazers make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Building CXX object core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/stellar/CMakeFiles/stellar.dir/stellar.cpp.o -MF CMakeFiles/stellar.dir/stellar.cpp.o.d -o CMakeFiles/stellar.dir/stellar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:29, from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:26: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:30: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:154:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_types.h:206:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:125:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 125 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:58:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:66:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Dependent >; TShape = Shape >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Dependent >; TShape = Shape >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:159:17: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String >; TSpec1 = Tag; TSource2 = Segment >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment >, InfixSegment>; typename Parameter_::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:475:16: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Dependent > >, IndexQGram, Tag > >; TSource = Index >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String >; TSpec1 = Tag; TSource2 = Segment >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String >; TSize = int; TEps = double; TAlign = seqan::Align >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>, InfixSegment>*; TParam = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>, InfixSegment>; typename Value::Type = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>, InfixSegment>; TValue2 = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:703:26: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:96:44: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar_extension.h:402:13: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:461:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:462:37: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:720:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:722:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:724:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:726:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = Segment >, InfixSegment>; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment >, InfixSegment>, InfixSegment>; TIterator = char*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment >, InfixSegment>, InfixSegment>; TSequenceV = Segment >, InfixSegment>, InfixSegment>; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:466:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, BandedGlobal) [with TInfix = seqan::Segment >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TSource = seqan::String >; TId = seqan::String >; BandedGlobal = const seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:62:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >; TPattern = seqan::Pattern >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = char]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:728:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:54:16: required from 'bool _stellarOnOne(TSequence&, TId&, TPattern&, bool, TMatches&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TPattern = seqan::Pattern, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >, seqan::Swift > >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > >, seqan::Owner<> >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:172:31: required from 'bool _stellarOnAll(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, StellarOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:688:23: required from 'int mainWithOptions(TOptions&, seqan::String) [with TOptions = StellarOptions; TAlphabet = seqan::SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar/stellar.cpp:718:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = ScoreAndID; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 30%] Linking CXX executable ../../../bin/stellar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar && /usr/bin/cmake -E cmake_link_script CMakeFiles/stellar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/stellar.dir/stellar.cpp.o -o ../../../bin/stellar -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Built target stellar make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Building CXX object core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT core/apps/tree_recon/CMakeFiles/tree_recon.dir/tree_recon.cpp.o -MF CMakeFiles/tree_recon.dir/tree_recon.cpp.o.d -o CMakeFiles/tree_recon.dir/tree_recon.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:37, from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:19: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:18: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:139:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 139 | if (res != seqan::ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:143:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 143 | typedef double TDistanceValue; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:165:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 165 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon/tree_recon.cpp:169:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 169 | String names; | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 32%] Linking CXX executable ../../../bin/tree_recon cd /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon && /usr/bin/cmake -E cmake_link_script CMakeFiles/tree_recon.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/tree_recon.dir/tree_recon.cpp.o -o ../../../bin/tree_recon -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target tree_recon make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target seqan_extras make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/alf/CMakeFiles/alf.dir/alf.cpp.o -MF CMakeFiles/alf.dir/alf.cpp.o.d -o CMakeFiles/alf.dir/alf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11: required from 'seqan::String& seqan::operator+=(String&, const TRight&) [with TLeftValue = SimpleType; TLeftSpec = Alloc<>; TRight = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = unsigned int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_base.h:1051:9: required from 'void seqan::unhash(TString&, THash, unsigned int) [with TString = String, Alloc<> >; THash = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:60:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:181:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> > >, IndexQGram > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15: required from 'void seqan::MarkovModel::build(const seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10: required from 'void seqan::buildMarkovModel(MarkovModel&, StringSet >&) [with TAlphabet = SimpleType; TFloat = double; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21: required from 'void seqan::countKmers(String >&, MarkovModel&, const TString&, unsigned int) [with TString = String, Alloc<> >; TAlphabetBG = SimpleType; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TStringSet = StringSet, Alloc<> > >; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> > >, IndexQGram > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexQGram >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:303:15: required from 'void seqan::MarkovModel::build(const seqan::StringSet >&) [with TAlphabet = seqan::SimpleType; TFloat = double; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/statistics/statistics_markov_model.h:866:10: required from 'void seqan::buildMarkovModel(MarkovModel&, StringSet >&) [with TAlphabet = SimpleType; TFloat = double; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:395:21: required from 'void seqan::countKmers(String >&, MarkovModel&, const TString&, unsigned int) [with TString = String, Alloc<> >; TAlphabetBG = SimpleType; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_d2z.h:135:23: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TStringSet = StringSet, Alloc<> > >; TValue = double]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:195:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1980:11: required from 'seqan::String& seqan::operator+=(String&, const TRight&) [with TLeftValue = SimpleType; TLeftSpec = Alloc<>; TRight = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:1292:66: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15: required from 'void seqan::calculateCovariance(TValue&, const String&, const String&, MarkovModel&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48: required from 'void seqan::_standardiseCounts(TString&, const String >&, const StringSet > >&, const TSequence&, const AFScore >&) [with TString = String; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TValue = double; TStringSet = StringSet, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/kmer_functions.h:850:15: required from 'void seqan::calculateCovariance(TValue&, const String&, const String&, MarkovModel&, int) [with TValue = double; TSpec = Alloc<>; TAlphabet = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:549:48: required from 'void seqan::_standardiseCounts(TString&, const String >&, const StringSet > >&, const TSequence&, const AFScore >&) [with TString = String; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/af_n2.h:179:27: required from 'void seqan::_alignmentFreeComparison(Matrix&, const TStringSet&, const AFScore >&) [with TValue = double; TStringSet = StringSet, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/alignment_free/alignment_free_comparison.h:151:29: required from 'void seqan::alignmentFreeComparison(Matrix&, const TStringSet&, const TComparisonMethod&) [with TStringSet = StringSet, Alloc<> > >; TValue = double; TComparisonMethod = AFScore >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf/alf.cpp:205:32: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 32%] Linking CXX executable ../../../bin/alf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf && /usr/bin/cmake -E cmake_link_script CMakeFiles/alf.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/alf.dir/alf.cpp.o -o ../../../bin/alf -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target alf make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -MF CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o.d -o CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:23: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/parse_alignment.h:27, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.h:34, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator/breakpoint_calculator.cpp:25: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 32%] Linking CXX executable ../../../bin/breakpoint_calculator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator && /usr/bin/cmake -E cmake_link_script CMakeFiles/breakpoint_calculator.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/breakpoint_calculator.dir/breakpoint_calculator.cpp.o -o ../../../bin/breakpoint_calculator -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target breakpoint_calculator make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Building CXX object extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/bisar.dir/bisar.cpp.o -MF CMakeFiles/bisar.dir/bisar.cpp.o.d -o CMakeFiles/bisar.dir/bisar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:46: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_score.h:28:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 28 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:157:26: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:127:19: required from 'int reAlign4(TReadGaps&, TContigGaps&, TFragmentStore&, TId&, TBsScoreCTLeft&, TBsScoreCTRight&, TBsScoreGALeft&, TBsScoreGARight&, TOptions&) [with TReadGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TFragmentStore = seqan::FragmentStore; TId = unsigned int; TBsScoreCTLeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreCTRight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGALeft = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TBsScoreGARight = seqan::Score, seqan::Tag, seqan::Tag, seqan::Tag > >; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1289:17: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1256:18: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:242:20: required from 'int writeBsAlignment(TStream&, const seqan::BamIOContext&, TFragmentStore&, TContigGaps&, TId&, TScore&, seqan::BamAlignmentRecord&, TOptions&) [with TStream = std::basic_fstream; TNameStore = seqan::StringSet > >; TNameStoreCache = seqan::NameStoreCache > > >; TFragmentStore = seqan::FragmentStore; TContigGaps = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TId = unsigned int; TScore = double; TOptions = AppOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1194:41: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragmentStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar_base.h:102:17: required from 'bool loadReadsCroppedId(seqan::FragmentStore&, TFileName&, TFileName&) [with TFSSpec = seqan::MyFragmentStoreConfig; TFSConfig = seqan::FragmentStoreConfig; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.h:1117:27: required from 'bool postProcessMain(TOptions&, const TModel&) [with TOptions = AppOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/bisar.cpp:294:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 33%] Linking CXX executable ../../../bin/bisar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/bisar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bisar.dir/bisar.cpp.o -o ../../../bin/bisar -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Built target bisar make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/casbar.dir/casbar.cpp.o -MF CMakeFiles/casbar.dir/casbar.cpp.o.d -o CMakeFiles/casbar.dir/casbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/../../extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:64: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:6, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:72: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:42:57: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 42 | struct FunctorDna5OrdValueComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:17:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 17 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:66:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 66 | struct LessPosLen : public ::std::binary_function < TPosLen, TPosLen, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:81:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 81 | public ::std::binary_function < typename Value::Type, typename Value::Type, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:129:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 129 | struct LessId : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:142:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 142 | struct LessGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:165:40: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 165 | struct LessGPosEnd : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:184:42: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 184 | struct LessGPosEndOa : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:206:36: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct HigherQ : public ::std::binary_function < TQual, TQual, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1387:36: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:75, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1180:37: required from 'TStream& seqan::operator<<(TStream&, const Gaps&) [with TStream = std::basic_ostream; TSource = String >; TSpec = AnchorGaps, Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1527:47: required from 'void doSnpAndMethCalling(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, bool, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:765:36: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const Gaps&, const TIDString&, Raw) [with TFile = std::basic_ostream; TSource = String >; TIDString = char [1]; TSpec = AnchorGaps, Alloc<> > >; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const Gaps&, const TIDString&, Raw) [with TFile = std::basic_ostream; TSource = String >; TIDString = char [1]; TSpec = AnchorGaps, Alloc<> > >; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:343:54: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = const Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = const Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:1157:36: required from 'void seqan::write(TFile&, const Gaps&, const TIDString&, Raw) [with TFile = std::basic_ostream; TSource = String >; TIDString = char [1]; TSpec = AnchorGaps, Alloc<> > >; Raw = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2110:7: required from 'void seqan::_printRead(TStream&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = std::basic_ostream; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1195:31: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = const seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 211 | return TProxy(it); | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:99:27: note: initializing argument 1 of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]' 99 | Proxy(TIterator const _it) | ~~~~~~~~~~~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(const seqan::Proxy >&) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:20: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:106:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 106 | : data_iterator(_other.data_iterator) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:680:15: required from 'int readMatchesFromSamBam(TSetContigAnchorGaps&, TReader&, seqan::BamIOContext&, seqan::BamAlignmentRecord&, TFragmentStore&, TFragmentStore&, TContigId, TContigPos, TContigPos, TOptions&) [with TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TReader = seqan::RecordReader, seqan::SinglePass >; TNameStore = seqan::StringSet > >; TFragmentStore = seqan::FragmentStore; TContigId = int; TContigPos = long int; TOptions = SNPCallingOptions; typename seqan::Value::Type = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:697:47: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:96: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h: In instantiation of 'seqan::Proxy >::Proxy(TIterator) [with TIterator = seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:211:12: required from 'typename seqan::Reference > > >::Type seqan::value(Iter > >&) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; typename Reference > > >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_base.h:297:17: required from 'typename seqan::Reference >::Type seqan::operator*(Iter&) [with TContainer = Gaps >, AnchorGaps, Alloc<> > > >; TSpec = GapsIterator, Alloc<> > > >; typename Reference >::Type = Proxy >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_svg.h:352:119: required from 'void seqan::_printRead(SVGFile&, const Tag&, AlignedReadLayout&, TContigGaps&, TReadGaps&, TAlignedRead&, TLine) [with TFormatTag = TagRaw_; TContigGaps = Gaps >, AnchorGaps, Alloc<> > > >; TReadGaps = Gaps >, AnchorGaps, Alloc<> > > >; TAlignedRead = AlignedReadStoreElement, void>; TLine = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2278:14: required from 'void seqan::printAlignment(TStream&, const Tag&, AlignedReadLayout&, FragmentStore&, TContigId, TPos, TPos, TNum, TNum) [with TStream = SVGFile; TFormatTag = TagRaw_; TSpec = SnpStoreSpec_; TConfig = FragmentStoreConfig; TContigId = int; TPos = long int; TNum = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_consensus_realign.h:633:27: required from 'void reAlign(seqan::FragmentStore&, TId, TBandwidth, bool, TOptions&, const TModel&) [with TSpec = seqan::SnpStoreSpec_; TConfig = seqan::FragmentStoreConfig; TId = int; TBandwidth = int; TOptions = MethCallingOptions; TModel = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_realignment.h:245:12: required from 'void doRealigning(TFragmentStore&, typename TFragmentStore::TContigPos, typename TFragmentStore::TContigPos, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; typename TFragmentStore::TContigPos = long int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.h:1231:29: required from 'void doCheckRealignCall(TFragmentStore&, TContigPos, TContigPos, TContigPos, TSetContigAnchorGaps&, TVcfStream&, TBedStream&, TMethOptions&, TOptions&) [with TFragmentStore = seqan::FragmentStore; TContigPos = long int; TSetContigAnchorGaps = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:752:35: required from 'bool detectSNPsForContig(TVcfStream&, TBedStream&, seqan::FragmentStore&, TContigId&, TReaders&, TContexts&, TRecords&, TContigIntervals&, TOptions&, TMethOptions&) [with TVcfStream = seqan::VcfStream; TBedStream = seqan::BedStream; TSpec = seqan::SnpStoreSpec_; TContigId = int; TReaders = seqan::String, seqan::SinglePass >*>; TContexts = seqan::String > > > >; TRecords = seqan::String; TContigIntervals = seqan::String > >; TOptions = SNPCallingOptions; TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:919:32: required from 'int detectSNPs(SNPCallingOptions&, TMethOptions&) [with TMethOptions = MethCallingOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar.cpp:1286:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/proxy_iterator.h:100:15: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 100 | : data_iterator(_it) | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps >, AnchorGaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 564 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here 565 | case 'D': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 190 | me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here 191 | case -1: // Ref gap | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsTop&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:190:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 190 | me.targetFreqs[i][3] += ((1.0-estMethLevel)/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:191:13: note: here 191 | case -1: // Ref gap | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 265 | me.targetFreqs[i][3] += (1.0/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here 266 | case -1: // Ref gap | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h: In function 'void seqan::assignTargetFreqs(Score >&, const TString&, TMethOptions&, BsBottom&) [with TValue = double; TString = String, double> >; TBsProfileScore = const Tag; TModel = Tag; TCellDescriptor = Tag; TMethOptions = MethCallingOptions]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:265:38: warning: this statement may fall through [-Wimplicit-fallthrough=] 265 | me.targetFreqs[i][3] += (1.0/sum)/4.0; // T | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_score.h:266:13: note: here 266 | case -1: // Ref gap | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:937:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:351:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:352:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:353:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:354:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:437:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:361:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:362:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:363:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = long double; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long double; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long double; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = long double; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const Naive&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:364:22, inlined from 'void adjustConstantsSize(TConstantSet&, TStrand, const LogFunction&) [with TConstantSet = seqan::String > >; TStrand = char]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:374:24, inlined from 'void constructConstantsAndLHoods(TConstantSet&, TLHoods&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TMethOptions&, TRefContext&, const TMethod&) [with TConstantSet = seqan::String > >; TLHoods = seqan::String; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TMethOptions = MethCallingOptions; TRefContext = RefContext; TMethod = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:518:36, inlined from 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/casbar_calling.h:945:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void getCandidateProbs(TProbs&, TBetas&, TMethOptions&, TOptions&, TQStrings&, TQStrings&, TMapqs&, TMapqs&, TOriginString&, TOriginString&, TCounts&, TCounts&, TRefContext&) [with TProbs = seqan::String; TBetas = seqan::String; TMethOptions = MethCallingOptions; TOptions = SNPCallingOptions; TQStrings = seqan::String > >; TMapqs = seqan::String >; TOriginString = seqan::String >; TCounts = seqan::String >; TRefContext = RefContext]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 35%] Linking CXX executable ../../../bin/casbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/casbar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/casbar.dir/casbar.cpp.o -o ../../../bin/casbar -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Built target casbar make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Building CXX object extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/bs_tools/CMakeFiles/four2three.dir/four2three.cpp.o -MF CMakeFiles/four2three.dir/four2three.cpp.o.d -o CMakeFiles/four2three.dir/four2three.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:40: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:14:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 14 | struct ConvertCT : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.h:23:34: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 23 | struct ConvertGA : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools/four2three.cpp:36: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 37%] Linking CXX executable ../../../bin/four2three cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/four2three.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/four2three.dir/four2three.cpp.o -o ../../../bin/four2three -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target four2three make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -MF CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o.d -o CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_bam_coverage.cpp:219:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 38%] Linking CXX executable ../../../bin/fx_bam_coverage cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_bam_coverage.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_bam_coverage.dir/fx_bam_coverage.cpp.o -o ../../../bin/fx_bam_coverage -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_bam_coverage make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Building CXX object extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -MF CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o.d -o CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_tree.h:65, from /usr/include/c++/13/map:62, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:35: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:580:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, TQualString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TQualString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:458:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, TQualities&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TQualities = seqan::String >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:680:38: required from 'int seqan::readRecord(TId&, TSequence&, TQualities&, SequenceStream&) [with TId = String >; TSequence = String, Alloc<> >; TQualities = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools/fx_fastq_stats.cpp:303:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/ppc64le-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/bits/stl_tree.h:64: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 38%] Linking CXX executable ../../../bin/fx_fastq_stats cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools && /usr/bin/cmake -E cmake_link_script CMakeFiles/fx_fastq_stats.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/fx_fastq_stats.dir/fx_fastq_stats.cpp.o -o ../../../bin/fx_fastq_stats -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_fastq_stats make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Building CXX object extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/gustaf/CMakeFiles/gustaf.dir/gustaf.cpp.o -MF CMakeFiles/gustaf.dir/gustaf.cpp.o.d -o CMakeFiles/gustaf.dir/gustaf.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:28, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:24: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seeds.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:30: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:154:32: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | struct LessPos : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_types.h:206:35: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 206 | struct LessLength : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/parse_lm.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/create_stellarmatches_from_file.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_parseOptions.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_out.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:30: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:47: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 688 | Segment finderSegment(finderInfixSeq, | ^~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf.cpp:25: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:701:74: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 701 | Segment::Type, InfixSegment> patternSegment(patternInfixSeq, | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:151:46: note: initializing argument 1 of 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' 151 | Segment(typename Parameter_::Type _host, typename Position::Type _begin_index, typename Position::Type _end_index): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:152:29: required from 'seqan::Segment::Segment(typename seqan::Parameter_ >::Type>::Type, typename seqan::Position >::Type>::Type, typename seqan::Position >::Type>::Type) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Parameter_ >::Type>::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Host >::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::Position >::Type>::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:688:33: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h: In instantiation of 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:199:24: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 199 | TAlign ali(align); | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_smart_pointer.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(const T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:252:32: required from 'typename seqan::Parameter_::Type seqan::host(const Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:587:88: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:444:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 444 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Dependent >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = BucketMap; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet, Alloc<> >, Dependent > >; TShapeSpec = UngappedShape<0>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> >, Dependent > >; TSpec = IndexQGram, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:185:17: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:206: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:785:16: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h: In instantiation of 'typename seqan::Parameter_::Type seqan::_toParameter(T&) [with T = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:244:32: required from 'typename seqan::Parameter_::Type seqan::host(Segment&) [with THost_ = Segment, Alloc<> >, InfixSegment>; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:780:28: required from 'void integrateAlign(seqan::Align&, const seqan::Align::Type, seqan::InfixSegment>, TSpec2>&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec1 = seqan::Tag; TSpec2 = seqan::Tag; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:809:19: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_type.h:437:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 437 | return _object; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15: required from 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, TValue, String&) [with TValue = unsigned int; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:240:18: required from 'bool _checkRightMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:278:42: required from 'bool _checkMateMatches(const TMatch&, const seqan::String&, const TMSplazerChain&, const MSplazerOptions&) [with TMatch = StellarMatch, seqan::Alloc<> >, seqan::String > >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:345:35: required from 'void _initialiseGraphMatePairs(QueryMatches >&, TMSplazerChain&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_algorithms.h:644:42: required from 'void _chainQueryMatches(seqan::StringSet > >&, seqan::String&, seqan::String&, const seqan::StringSet >&, seqan::StringSet >&, seqan::String >&, const MSplazerOptions&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TScoreAlloc = seqan::String; TMSplazerChain = MSplazerChain >, unsigned int, seqan::String, SparsePropertyMap, seqan::Alloc<> >, seqan::String > >, unsigned int>, seqan::String, seqan::Alloc<> >, seqan::String > >, seqan::Alloc<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:224:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1949 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1961 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1982 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSource = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TValue2 = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; typename Reference > >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Host >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:447:13: required from 'typename seqan::Needle >::Type& seqan::needle(Pattern&) [with TNeedle = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >; TSpec = Swift >; typename Needle >::Type = Index, Alloc<> >, Dependent > >, IndexQGram, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:698:78: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >& seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >::operator=(const seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index, seqan::Alloc<> >, seqan::Dependent > >, seqan::IndexQGram, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet, seqan::Alloc<> >, seqan::Dependent > >; TShapeSpec = seqan::UngappedShape<0>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h: In instantiation of 'void seqan::integrateAlign(Align&, const Align&, const String&) [with TSource1 = String, Alloc<> >; TSpec1 = Tag; TSource2 = Segment, Alloc<> >, InfixSegment>; TSpec2 = Tag; TPos = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:154:19: required from 'void seqan::integrateAlign(Align&, const Align::Type, TSpec2>&) [with TSource = String, Alloc<> >; TSpec1 = Tag; TSpec2 = Tag; typename Infix::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:620:16: required from 'void _tracebackLeft(const TMatrix&, const TCoord&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, TPos, TPos, TAlign&) [with TMatrix = seqan::String >; TCoord = seqan::Pair; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TPos = long unsigned int; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:753:17: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/alignment_operations.h:124:12: warning: implicitly-declared 'constexpr seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >& seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >::operator=(const seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >&)' is deprecated [-Wdeprecated-copy] 124 | it = iter(row(align, i), value(viewPos, i)); | ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_array.h:91:5: note: because 'seqan::Iter, seqan::Alloc<> >, seqan::Tag >, seqan::GapsIterator > >' has user-provided 'seqan::Iter > >::Iter(const seqan::Iter > >&) [with TGaps = seqan::Gaps, seqan::Alloc<> >, seqan::Tag >]' 91 | Iter(Iter const & other) : | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer.h:121:8: required from 'bool _writeGlobalBreakpoints(const seqan::String&, seqan::StringSet >&, seqan::StringSet&, const MSplazerOptions&, seqan::Vcf) [with TBreakpoint = Breakpoint, seqan::Alloc<> >, seqan::String > >; TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::Vcf = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:271:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >*; TParam = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >*; TParam = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >, seqan::Alloc<> >; TValue = const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TTargetSpec = Alloc<>; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >, InfixSegment>, InfixSegment>, Tag >, Alloc<> >; TValue = Align, Alloc<> >, InfixSegment>, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:222:28: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>, InfixSegment>&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:401:10: required from 'void seqan::assignSource(Gaps >&, const TSequence2&) [with TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TSequence2 = Segment, Alloc<> >, InfixSegment>, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:614:17: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> >, InfixSegment>, Owner<> >; TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:402:13: required from 'void _fillMatrixBestEndsLeft(TMatrix&, seqan::String&, const seqan::Segment&, const seqan::Segment&, TSeed&, TSeed&, const TScore&) [with TMatrix = seqan::String >; TPossEnd = ExtensionEndPosition; TSequence = seqan::String, seqan::Alloc<> >; TSeed = seqan::Seed >; TScore = seqan::Score >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/gustaf_matepairs.h:177:15: required from 'bool _importSequences(const seqan::CharString&, const seqan::CharString&, bool, seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet >&, seqan::String >&) [with TSequence = seqan::String, seqan::Alloc<> >; TId = seqan::String >; seqan::CharString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:72:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment, Alloc<> >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment, Alloc<> >, InfixSegment>; TString2 = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:703:26: required from 'bool _bestExtension(const TInfix&, const TInfix&, TSeed&, TSeed&, TPos, TPos, const TScore&, TDir, TSize, TEps, TAlign&) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSeed = seqan::Seed >; TPos = long unsigned int; TDir = seqan::ExtensionDirection; TScore = seqan::Score >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar_extension.h:860:22: required from 'bool _extendAndExtract(const seqan::Align, seqan::InfixSegment> >&, TScoreValue, const TScore&, const seqan::Segment::Type, seqan::InfixSegment>&, const seqan::Segment::Type, seqan::InfixSegment>&, seqan::ExtensionDirection, TSize, TEps, TAlign&) [with TScoreValue = int; TScore = seqan::Score >; TSequence = seqan::String, seqan::Alloc<> >; TSize = int; TEps = double; TAlign = seqan::Align, seqan::Alloc<> >, seqan::Tag >; typename seqan::Infix::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:643:26: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1929:12: required from 'void seqan::replace(TTarget&, TPositionBegin, TPositionEnd, const TSource&) [with TTarget = String, Alloc<> >; TPositionBegin = int; TPositionEnd = int; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:224:20: required from 'void _splitAtXDrops(TAlign&, seqan::Score >&, TScoreValue1, TScoreValue2, seqan::String&) [with TAlign = seqan::Align, seqan::Alloc<> >, seqan::InfixSegment>, seqan::InfixSegment>, seqan::Tag >; TScoreValue = int; TScoreValue1 = int; TScoreValue2 = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:624:23: required from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: required from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/stellar_routines.h:197:20: required from 'void _getStellarMatches(seqan::StringSet >&, seqan::StringSet >&, seqan::StringSet > >&, StellarOptions&, TMatches&) [with TSequence = seqan::String, seqan::Alloc<> >; TMatches = seqan::StringSet, seqan::Alloc<> >, seqan::String > > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/msplazer_main.h:145:27: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = long unsigned int; T2 = long unsigned int; T3 = int; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = ScoreAndID; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = ScoreAndID; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = ScoreAndID; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = ScoreAndID; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = ScoreAndID; TLess = std::less >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'typename seqan::LocalAlignmentFinder::TMatrixPosition seqan::_getNextBestEndPosition(LocalAlignmentFinder&, TScoreValue) [with TScoreValue = int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_waterman_eggert_impl.h:673:8, inlined from 'TScoreValue seqan::_localAlignmentNext(LocalAlignmentFinder&, Gaps&, Gaps&, const TScore&, TScoreValue, TDiagonal, TDiagonal, const BandedWatermanEggert&) [with TScoreValue = int; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag; TScore = Score >; TDiagonal = int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:572:39, inlined from 'bool seqan::nextLocalAlignment(Gaps&, Gaps&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequenceH = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecH = Tag; TSequenceV = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TGapsSpecV = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:109:35, inlined from 'bool seqan::nextLocalAlignment(Align&, LocalAlignmentEnumerator, Tag >&) [with TScoreValue = int; TScoreSpec = Tag; TSequence = Segment, Alloc<> >, InfixSegment>, InfixSegment>; TAlignSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_enumeration_banded.h:121:30, inlined from 'void verifySwiftHit(const seqan::Segment&, const seqan::Segment&, TEpsilon, TSize, TDrop, TDelta, TSize1, TSize1&, TSize1, TId&, bool, QueryMatches >&, TTag) [with TInfix = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TEpsilon = double; TSize = int; TDelta = unsigned int; TDrop = double; TSize1 = unsigned int; TId = seqan::String >; TSource = seqan::String, seqan::Alloc<> >; TTag = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:617:30, inlined from 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf/../../../core/apps/stellar/stellar.h:716:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551584' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void stellar(seqan::Finder > >&, seqan::Pattern, TSpec>, seqan::Swift > >&, double, TSize, TDrop, TSize1, TSize1&, TSize1, TMode, TId&, bool, seqan::StringSet > >&, TTag) [with TText = seqan::String, seqan::Alloc<> >; TStringSetSpec = seqan::Dependent >; TIndexSpec = seqan::IndexQGram, seqan::Tag >; TSize = int; TDrop = double; TSize1 = unsigned int; TMode = bool; TSource = seqan::String, seqan::Alloc<> >; TId = seqan::String >; TTag = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In copy constructor 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed >; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In copy constructor 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = void; TSpec = const seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:191:50, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = int; TSpec = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In copy constructor 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = int; TSpec = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&, bool) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:192:24, inlined from 'void seqan::_copyGraph(const Graph >&, Graph >&) [with TCargo = int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:213:12, inlined from 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = int; TSpec = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:110:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In copy constructor 'seqan::Graph >::Graph(const seqan::Graph >&) [with TCargo = int; TSpec = seqan::Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 40%] Linking CXX executable ../../../bin/gustaf cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf && /usr/bin/cmake -E cmake_link_script CMakeFiles/gustaf.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/gustaf.dir/gustaf.cpp.o -o ../../../bin/gustaf -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Built target gustaf make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Building CXX object extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/insegt/CMakeFiles/insegt.dir/insegt.cpp.o -MF CMakeFiles/insegt.dir/insegt.cpp.o.d -o CMakeFiles/insegt.dir/insegt.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:14: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:16: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:21: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h: In function 'void seqan::createAnnoCountGFF(TFile&, TAnnoCountStore&, TAnnoNormStore&, FragmentStore&, TMap&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:225:9: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 225 | if (getValue(itAnno).typeId != INVALID_ID) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/create_gff.h:228:17: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 228 | if (getValue(itAnno).contigId == INVALID_ID ) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:23: /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h: In function 'bool seqan::ngsOverlapper(TOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:901:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 901 | if (!readOutput.good()) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:903:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 903 | createReadCountGFF(readOutput, readAnnoStore, fragStore); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:908:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 908 | if (!annoOutput.good()) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:910:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 910 | createAnnoCountGFF(annoOutput, annoCountStore, annoNormStore, fragStore, mapO); | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:915:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 915 | if (!tupleOutput.good()) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:917:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 917 | createTupleCountGFF(tupleOutput, tupleCountStore, fragStore, options.thresholdCount, options.thresholdRPKM); | ^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp: In function 'int main(int, const char**)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:188:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 188 | if (res != ArgumentParser::PARSE_OK) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:191:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 191 | if (options.maxTuple) | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h: In instantiation of 'seqan::Iter > seqan::nodeDown(const Iter >&) [with TFragmentStore = FragmentStore<>; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:45:64: required from 'void seqan::adjustParentEntries(FragmentStore&) [with TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:865:21: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1281:54: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 1281 | Iter > tmp(it); | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 415 | operator = (Iter const &_origin) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:1283:16: warning: implicitly-declared 'constexpr seqan::Iter, seqan::AnnotationTree<> >::Iter(const seqan::Iter, seqan::AnnotationTree<> >&)' is deprecated [-Wdeprecated-copy] 1283 | return tmp; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_annotation.h:415:9: note: because 'seqan::Iter, seqan::AnnotationTree<> >' has user-provided 'const seqan::Iter >& seqan::Iter >::operator=(const seqan::Iter >&) [with TFragmentStore = seqan::FragmentStore<>; TSpec = void]' 415 | operator = (Iter const &_origin) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = unsigned int; TCargo = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_intervaltree.h:182:15: required from 'void seqan::findIntervalsForInterval(String&, TIntervalTree&, TInterval&, const unsigned int&) [with TIntervalTree = IntervalTree; TInterval = Interval; TCargo = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:82:27: required from 'void seqan::getIdsForRead(TAnnoIds&, FragmentStore&, TIntervalTree&, TIntervals&, unsigned int) [with TAnnoIds = StringSet >, Owner<> >; TSpec = void; TConfig = FragmentStoreConfig; TIntervalTree = IntervalTree; TIntervals = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/fusion.h:775:18: required from 'void seqan::getResults_Fusion(TReadAnnoStore&, TAnnoCountStore&, TTupleCountStore&, TTupleCountStore_Fusion&, FragmentStore&, unsigned int, bool, unsigned int, unsigned int, bool) [with TReadAnnoStore = String >; TAnnoCountStore = String >; TTupleCountStore = String >; TTupleCountStore_Fusion = String >; TSpec = void; TConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:884:20: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1827 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1838 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1859 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, InfixSegment>, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = Segment >, InfixSegment>; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2801:19: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::InfixSegment>, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:12: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = const Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment, Alloc<> >, InfixSegment>; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2738:18: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder >, InfixSegment>, Tag >; TValue = Segment >, InfixSegment>; typename Value::Type = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment >, InfixSegment>; TValue2 = const Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1018:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Segment >, InfixSegment>; TSource = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:153:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2739:15: required from 'void seqan::convertPairWiseToGlobalAlignment(FragmentStore&, TContigGapsString&) [with TSpec = void; TConfig = FragmentStoreConfig; TContigGapsString = StringSet, Alloc<> >, Owner > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:459:45: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String >, GapAnchor, void>, Alloc<> >; TValue = ContigStoreElement >, GapAnchor, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1117:14: required from 'void seqan::_storeAppendContig(FragmentStore&, TId&, TName&) [with TSpec = void; TConfig = FragmentStoreConfig; TId = unsigned int; TName = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:256:23: required from 'void seqan::_storeOneAnnotation(TFragmentStore&, IOContextGff_&) [with TFragmentStore = FragmentStore<>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_gff.h:331:32: required from 'void seqan::read(TFile&, FragmentStore&, Gff) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Gff = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:861:10: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30: required from 'void seqan::_readAlignments(TStreamOrReader&, BamIOContext&, FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > >, String > >; TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet, Alloc<> >, Owner > >; TMatchMateInfos = String, Alloc<> >; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:577:30: required from 'void seqan::_readAlignments(TStreamOrReader&, BamIOContext&, FragmentStore&, TContigAnchorGaps&, TMatchMateInfos&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TNameStore = StringSet > >; TNameStoreCache = NameStoreCache > >, String > >; TSpec = void; TConfig = FragmentStoreConfig; TContigAnchorGaps = StringSet, Alloc<> >, Owner > >; TMatchMateInfos = String, Alloc<> >; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:452:24: required from 'void seqan::_readImpl(TStreamOrReader&, FragmentStore&, const TTag&, const FragStoreImportFlags&) [with TStreamOrReader = RecordReader, SinglePass >; TSpec = void; TConfig = FragmentStoreConfig; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:474:18: required from 'void seqan::read(TFile&, FragmentStore&, Sam, const FragStoreImportFlags&) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:496:13: required from 'void seqan::read(TFile&, FragmentStore&, Sam) [with TFile = std::basic_fstream; TSpec = void; TConfig = FragmentStoreConfig; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/overlap_module.h:838:6: required from 'bool seqan::ngsOverlapper(TOptions&) [with TOptions = InsegtOptions]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt/insegt.cpp:197:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps >, InfixSegment>, AnchorGaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorRead(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:534:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 534 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:535:13: note: here 535 | case 'I': | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h: In function 'unsigned int seqan::cigarToGapAnchorContig(const TCigarString&, TGaps&) [with TCigarString = String >; TGaps = Gaps, Alloc<> > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:564:27: warning: this statement may fall through [-Wimplicit-fallthrough=] 564 | insertGaps(it, cigar[i].count); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/cigar.h:565:13: note: here 565 | case 'D': | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 41%] Linking CXX executable ../../../bin/insegt cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt && /usr/bin/cmake -E cmake_link_script CMakeFiles/insegt.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/insegt.dir/insegt.cpp.o -o ../../../bin/insegt -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Built target insegt make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -MF CMakeFiles/mason_sim.dir/external_split_merge.cpp.o.d -o CMakeFiles/mason_sim.dir/external_split_merge.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:49: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/external_split_merge.h:50: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 43%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -MF CMakeFiles/mason_sim.dir/genomic_variants.cpp.o.d -o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:53, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:52: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:45, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = GenomicInterval]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1886:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, String&) [with TValue = int; TCargo = GenomicInterval]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:644:18: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1827:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1827 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1838:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1838 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1859:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1859 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:246:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = Segment, Alloc<> >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String, Alloc<> >; TSource = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.cpp:234:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/mason_options.cpp.o -MF CMakeFiles/mason_sim.dir/mason_options.cpp.o.d -o CMakeFiles/mason_sim.dir/mason_options.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_options.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ [ 45%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -MF CMakeFiles/mason_sim.dir/methylation_levels.cpp.o.d -o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:39: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >; TValue = String >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = String >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = String >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = String >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/tool_doc.h:284:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551568' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::HtmlToolDocPrinter_::_toHtml(const TSequence&) const [with TSequence = seqan::String >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_454.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_454.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_454.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:372:24: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22, inlined from 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:377:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In member function 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22, inlined from 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_454.cpp:382:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'virtual void Roche454SequencingSimulator::simulateRead(TRead&, TQualities&, SequencingSimulationInfo&, const TFragment&, SequencingSimulator::Direction, SequencingSimulator::Strand)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 46%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_base.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_base.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_base.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_base.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_genome.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const char; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = char; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = char]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.cpp:69:28: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 161 | _host(std::forward(host)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 165 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:72: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:193:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:259:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:201:28: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_illumina.cpp:257:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In function 'std::pair appendOperation(TCigarString&, char)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 48%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -MF CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o.d -o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h: In instantiation of 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 161 | _host(std::forward(host)) | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:165:53: note: initializing argument 1 of 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 165 | ModifiedString(typename Parameter_::Type host): | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:111:7: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = const String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_view.h:166:25: required from 'seqan::ModifiedString >::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TFunctor = seqan::FunctorComplement >; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:161:13: required from 'seqan::ModifiedString::ModifiedString(THost_&&, typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type*) [with THost_ = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; THost = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >; TSpec = seqan::Tag; typename seqan::EnableIf::Type, typename seqan::RemoveReference::Type> >::Type = void; typename seqan::RemoveReference::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; typename seqan::RemoveReference::Type = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:76: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:670:20: required from 'typename seqan::Iterator, const seqan::Tag >::Type seqan::end(ModifiedString&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TSpec = ModView > >; TTagSpec = Rooted_; typename Iterator, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:452:102: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(const ModifiedString >&, Tag) [with THost = ModifiedString, Alloc<> >, InfixSegment>, ModView > > >; TTagSpec = Standard_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, ModView > > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:59:25: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::ModView > > >, seqan::Tag >; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:146:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = const seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = const seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1477:56: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = const seqan::SimpleType; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TValue = SimpleType; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = String, Alloc<> >; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:67:28: required from 'void {anonymous}::_simulateSequence(TRead&, TRng&, const TFrag&, const TCigarString&) [with TFrag = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TRead = seqan::String, seqan::Alloc<> >; TRng = seqan::Rng; TCigarString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_sanger.cpp:144:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In function 'std::pair appendOperation(TCigarString&, char)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -MF CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o.d -o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/stdexcept:39, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.cpp:268:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/stdexcept:38: /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 50%] Linking CXX static library libmason_sim.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -P CMakeFiles/mason_sim.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_sim.dir/link.txt --verbose=1 /usr/bin/ar qc libmason_sim.a CMakeFiles/mason_sim.dir/external_split_merge.cpp.o CMakeFiles/mason_sim.dir/genomic_variants.cpp.o CMakeFiles/mason_sim.dir/mason_options.cpp.o CMakeFiles/mason_sim.dir/methylation_levels.cpp.o CMakeFiles/mason_sim.dir/simulate_454.cpp.o CMakeFiles/mason_sim.dir/simulate_base.cpp.o CMakeFiles/mason_sim.dir/simulate_genome.cpp.o CMakeFiles/mason_sim.dir/simulate_illumina.cpp.o CMakeFiles/mason_sim.dir/simulate_sanger.cpp.o CMakeFiles/mason_sim.dir/vcf_materialization.cpp.o /usr/bin/ranlib libmason_sim.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_sim make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Building CXX object extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_genome.dir/mason_genome.cpp.o -MF CMakeFiles/mason_genome.dir/mason_genome.cpp.o.d -o CMakeFiles/mason_genome.dir/mason_genome.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/simulate_genome.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_genome.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../../../bin/mason_genome cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_genome.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_genome.dir/mason_genome.cpp.o -o ../../../bin/mason_genome -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_genome make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -MF CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o.d -o CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_methylation.cpp:166:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 51%] Linking CXX executable ../../../bin/mason_methylation cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_methylation.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_methylation.dir/mason_methylation.cpp.o -o ../../../bin/mason_methylation -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_methylation make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Building CXX object extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -MF CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o.d -o CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:39: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String, seqan::Alloc<> >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38: required from 'int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String >; TSequence = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_frag_sequencing.cpp:202:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 53%] Linking CXX executable ../../../bin/mason_frag_sequencing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_frag_sequencing.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_frag_sequencing.dir/mason_frag_sequencing.cpp.o -o ../../../bin/mason_frag_sequencing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Built target mason_frag_sequencing make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Building CXX object extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_variator.dir/mason_variator.cpp.o -MF CMakeFiles/mason_variator.dir/mason_variator.cpp.o.d -o CMakeFiles/mason_variator.dir/mason_variator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:48: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:1085:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String; TValue = StructuralVariantRecord; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = StructuralVariantRecord; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = StructuralVariantRecord; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const seqan::CharString&)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_variator.cpp:317:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551504' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void StructuralVariantSimulator::_simulateFromSizes(Variants&, unsigned int, int, const seqan::CharString&)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 54%] Linking CXX executable ../../../bin/mason_variator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_variator.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_variator.dir/mason_variator.cpp.o -o ../../../bin/mason_variator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Built target mason_variator make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Building CXX object extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -MF CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o.d -o CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:47: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp: In member function 'int MasonMaterializerApp::run()': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_materializer.cpp:110:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=] 110 | catch (MasonIOException e) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 56%] Linking CXX executable ../../../bin/mason_materializer cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_materializer.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_materializer.dir/mason_materializer.cpp.o -o ../../../bin/mason_materializer -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 56%] Built target mason_materializer make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Building CXX object extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -MF CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o.d -o CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/vector:68, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:40: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:47: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/random.h:46, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>*; TParam = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment, Alloc<> >, InfixSegment>*; TParam = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, InfixSegment>, Tag >; TValue = Segment, Alloc<> >, InfixSegment>; typename Value::Type = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Segment, Alloc<> >, InfixSegment>; TValue2 = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Segment, Alloc<> >, InfixSegment>; typename Reference > >::Type = Segment, Alloc<> >, InfixSegment>&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:243:34: required from 'void seqan::_reinitArrayGaps(Gaps >&) [with TSequence = Segment, Alloc<> >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:153:25: required from 'seqan::Gaps >::Gaps(TSequence&) [with TSequence = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:221:57: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:24: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 686 | return Iter >(container(left), hostIterator(left) - right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1205:52: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:619:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 619 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1206:55: required from 'void seqan::_computeHammingDistance(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const TBand&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TBand = DPBand_ >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1421:32: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:476:40: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:41: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:686:12: required from 'seqan::Iter > seqan::operator-(const Iter >&, int) [with TContainer = Segment, Alloc<> >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:477:58: required from 'void seqan::_computeUnbandedAlignment(TDPScout&, TDPScoreMatrixNavigator&, TDPTraceMatrixNavigator&, const TSequenceH&, const TSequenceV&, const TScoringScheme&, const DPProfile_&) [with TDPScout = DPScout_ >, If > >, Terminator_<>, Tag > >; TDPScoreMatrixNavigator = DPMatrixNavigator_ >, Tag >, Tag, Tag >; TDPTraceMatrixNavigator = DPMatrixNavigator_ >, DPTraceMatrix, Tag > > >, Tag >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoringScheme = Score >; TAlignmentAlgo = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_algorithm_impl.h:1419:34: required from 'typename seqan::Value::Type seqan::_computeAlignment(TTraceTarget&, TScoutState&, const TSequenceH&, const TSequenceV&, const TScoreScheme&, const DPBand_&, const DPProfile_&) [with TTraceTarget = String, Alloc<> >; TScoutState = DPScoutState_ >; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreScheme = Score >; TBandSwitch = Tag; TAlignmentAlgorithm = GlobalAlignment_ >; TGapCosts = Tag; TTraceFlag = TracebackOn, Tag > >; typename Value::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:675:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, DPScoutState_&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TDPScoutStateSpec = Tag; TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:716:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&, const TGapsTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; TGapsTag = TracebackConfig_, Tag >; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/dp_setup.h:732:33: required from 'typename seqan::Value >::Type seqan::_setUpAndRunAlignment(String&, const TSequenceH&, const TSequenceV&, const Score&, const TAlignConfig&, int, int, const TAlgoTag&) [with TTraceSegment = TraceSegment_; TSpec = Alloc<>; TSequenceH = Segment, Alloc<> >, InfixSegment>; TSequenceV = String, Alloc<> >; TScoreValue = int; TScoreSpec = Tag; TAlignConfig = AlignConfig<>; TAlgoTag = Tag; typename Value >::Type = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:172:44: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int, const TAlgoTag&) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag; TAlgoTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:209:31: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, const AlignConfig&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag; bool TOP = false; bool LEFT = false; bool RIGHT = false; bool BOTTOM = false; TACSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_banded.h:226:27: required from 'TScoreValue seqan::globalAlignment(Gaps&, Gaps&, const Score&, int, int) [with TSequenceH = Segment, Alloc<> >, InfixSegment>; TGapsSpecH = Tag; TSequenceV = String, Alloc<> >; TGapsSpecV = Tag; TScoreValue = int; TScoreSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:229:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String, seqan::Alloc<> >; TValue = seqan::SimpleType; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = unsigned int; TValue2 = SimpleType; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String, Alloc<> >; TSize = unsigned int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:426:11: required from 'int seqan::readRegion(String&, const FaiIndex&, unsigned int, unsigned int, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:505:22: required from 'int seqan::readSequence(String&, const FaiIndex&, unsigned int) [with TValue = SimpleType; TSpec = Alloc<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_simulator.cpp:817:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/ppc64le-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/vector:63: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/fragment_generation.h:45: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 58%] Linking CXX executable ../../../bin/mason_simulator cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_simulator.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_simulator.dir/mason_simulator.cpp.o -o ../../../bin/mason_simulator -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Built target mason_simulator make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Building CXX object extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -MF CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o.d -o CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:42: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:46: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h: In function 'int seqan::writeRecord(TStream&, const VcfRecord&, const VcfIOContext&, const Vcf&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:190:5: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 190 | else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/vcf_io/write_vcf.h:192:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 192 | streamWriteChar(stream, '\t'); | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/genomic_variants.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/vcf_materialization.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp: In member function 'int MasonSplicingApp::run()': /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:138:33: warning: catching polymorphic type 'class MasonIOException' by value [-Wcatch-value=] 138 | catch (MasonIOException e) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String, seqan::Alloc<> >; TSource = const seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1608:11: required from 'void seqan::append(TTarget&, TSource&) [with TTarget = String, Alloc<> >; TSource = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_splicing.cpp:292:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 59%] Linking CXX executable ../../../bin/mason_splicing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_splicing.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_splicing.dir/mason_splicing.cpp.o -o ../../../bin/mason_splicing -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Built target mason_splicing make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Building CXX object extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/mason2/CMakeFiles/mason_tests.dir/mason_tests.cpp.o -MF CMakeFiles/mason_tests.dir/mason_tests.cpp.o.d -o CMakeFiles/mason_tests.dir/mason_tests.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/mason_tests.cpp:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/methylation_levels.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = CigarElement<>; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = CigarElement<>; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = CigarElement<>; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:365:22, inlined from 'std::pair appendOperation(TCigarString&, char)' at /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2/sequencing.h:356:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'std::pair appendOperation(TCigarString&, char)': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 61%] Linking CXX executable ../../../bin/mason_tests cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 && /usr/bin/cmake -E cmake_link_script CMakeFiles/mason_tests.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/mason_tests.dir/mason_tests.cpp.o -o ../../../bin/mason_tests -lrt -L/usr/lib64 -lz libmason_sim.a -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target mason_tests make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -MF CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o.d -o CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_plot_thumbnails.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 61%] Linking CXX executable ../../../bin/roi_plot_thumbnails cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_plot_thumbnails.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_plot_thumbnails.dir/roi_plot_thumbnails.cpp.o -o ../../../bin/roi_plot_thumbnails -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target roi_plot_thumbnails make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/bam2roi.cpp.o -MF CMakeFiles/bam2roi.dir/bam2roi.cpp.o.d -o CMakeFiles/bam2roi.dir/bam2roi.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:37: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_stream.h:50, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:107: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/bam2roi.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 62%] Building CXX object extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/roi_builder.cpp.o -MF CMakeFiles/bam2roi.dir/roi_builder.cpp.o.d -o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.cpp:35: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:44, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_builder.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_base.h:343:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 343 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h: In function 'void seqan::njTree(const String&, Graph >&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:148:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 148 | for (unsigned i = 0; i < length(mat); ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_guidetree.h:152:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 152 | String<__int64> av; // Average branch length to a combined node | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, StringSet&, TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:416:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 416 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:420:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 420 | TString seq; | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TNames&, FastaAlign)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:534:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 534 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:538:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 538 | String mat; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, String&, String&, const TStringSet&, const TNames&, MummerLib)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:878:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 878 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:880:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 880 | TName seq1; | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h: In function 'void seqan::read(TFile&, Graph >&, TNames&, NewickFormat)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:985:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 985 | if (atEnd(reader)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_msa/graph_align_tcoffee_io.h:988:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 988 | TVertexDescriptor lastVertex = nilVertex; | ^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h: In function 'void seqan::getGappedConsensus(FragmentStore&, TGappedConsensus&, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:387:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 387 | for(int i = 0; i < ((int) itGaps->gapPos - (int) itGaps->seqPos) - diff; ++i) | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_base.h:389:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 389 | diff = (itGaps->gapPos - itGaps->seqPos); | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:91:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 91 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/consensus/consensus_library.h:102:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 102 | public ::std::unary_function >, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 64%] Linking CXX executable ../../../bin/bam2roi cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/bam2roi.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/bam2roi.dir/bam2roi.cpp.o CMakeFiles/bam2roi.dir/roi_builder.cpp.o -o ../../../bin/bam2roi -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Built target bam2roi make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -MF CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/roi_feature_projection.cpp:43: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/gff_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:48: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io/roi_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/roi_io.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_spliced.h:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 66%] Building CXX object extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_ZLIB=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -MF CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o.d -o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:42, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi/project_interval.h:38: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io/bed_io_context.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/bed_io.h:54: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 67%] Linking CXX executable ../../../bin/roi_feature_projection cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi && /usr/bin/cmake -E cmake_link_script CMakeFiles/roi_feature_projection.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/roi_feature_projection.dir/roi_feature_projection.cpp.o CMakeFiles/roi_feature_projection.dir/project_spliced.cpp.o CMakeFiles/roi_feature_projection.dir/project_interval.cpp.o -o ../../../bin/roi_feature_projection -lrt -L/usr/lib64 -lz make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Built target roi_feature_projection make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Building CXX object extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/param_chooser.dir/param_chooser.cpp.o -MF CMakeFiles/param_chooser.dir/param_chooser.cpp.o.d -o CMakeFiles/param_chooser.dir/param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:32: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:64, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:38: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h: In function 'void seqan::pms1(TStrings&, TStrings&, const TType&, const TType&, const bool&, const Oops&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_pms1.h:264:82: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = equal_to; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 264 | std::count_if(vect_iter, upper_iter, std::bind2nd(std::equal_to(), *vect_iter)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/stl_function.h:1438: /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:66: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h: In function 'void seqan::_filteringStep(TBucketAr&, TArray&, TType&, TStrings&, TPositions&, const TType&, const TType&)': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif/find_motif_projection.h:627:50: warning: 'std::binder2nd<_Operation> std::bind2nd(const _Operation&, const _Tp&) [with _Operation = greater_equal; _Tp = int]' is deprecated: use 'std::bind' instead [-Wdeprecated-declarations] 627 | bind2nd(std::greater_equal(),static_cast(s))); | ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/backward/binders.h:172:5: note: declared here 172 | bind2nd(const _Operation& __fn, const _Tp& __x) | ^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:40: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 712 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 740 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 766 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 198 | if (skipWhitespaces(reader) != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 201 | int kickout = 0; | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 373 | if (pm_options.verbose) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 376 | resize(avg,pm_options.totalN,(TFloat)0.0); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 934 | if (value(reader) == 'e') | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 938 | bool atLeastOneFound = false; | ^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: In instantiation of 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:33: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1466 | TGenomeInfixRev infRev(inf); | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:36: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/find_motif.h:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:5: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc<> >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1466:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:77: required from 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1467:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2311:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: required from 'bool seqan::find(Finder >&, Pattern >&, double, TSize) [with THaystack = String, Alloc<> >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Tag >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1860:16: required from 'bool seqan::find(TFinder&, Pattern > > >&, double) [with TFinder = Finder, Alloc<> >, Swift > > >; TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1689:13: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2314:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1435:15: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1661:31: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:368:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText_ = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >; TSpec = seqan::Tag]' 368 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:333:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 333 | class Index > { | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:28: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment, Alloc<> >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment, Alloc<> >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TSpec = FindInfix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1450:13: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment, Alloc<> >, InfixSegment>; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment, Alloc<> >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment, Alloc<> >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString, seqan::Alloc<> >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1468:19: required from 'bool seqan::matchVerify(TMatch&, Segment, unsigned int, TReadSet&, TMyersPatterns&, const RazerSOptions&, SwiftSemiGlobal) [with TMatch = ReadMatch; TGenome = String, Alloc<> >; TReadSet = StringSet >, Owner > >; TMyersPatterns = String >, InfixSegment>, Myers >, Alloc<> >; TSpec = RazerSSpec; SwiftSemiGlobal = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1694:15: required from 'void seqan::mapSingleReads(TMatches&, TGenome&, unsigned int, Pattern >&, TVerifier&, TCounts&, char, RazerSOptions&) [with TMatches = String >; TGenome = String, Alloc<> >; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSwiftSpec = Tag >; TVerifier = String >, InfixSegment>, Myers >, Alloc<> >; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16: required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet >, Owner > >; TReadIDs = StringSet > >; TGenomeSet = StringSet, Alloc<> > >; TDistr = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter, Alloc<> >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:18: required from 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = ModifiedString, Alloc<> >, InfixSegment>, Tag >; TSpec = void; typename Parameter_::Type = ModifiedString, Alloc<> >, InfixSegment>, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1724:42: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1756:13: required from 'bool seqan::find(TFinder&, const Pattern >&, PatternState_ >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; THasState = True; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1774:13: required from 'bool seqan::find(TFinder&, Pattern >&, int) [with TFinder = Finder, Alloc<> >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:1473:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2308:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc<> >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc<> >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String, Alloc<> >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/readSimulator.h:433:16: required from 'void seqan::simulateReads(TReadSet&, TReadIDs&, TGenomeSet&, int, int, TDistr&, int, int, double, bool) [with TReadSet = StringSet >, Owner > >; TReadIDs = StringSet > >; TGenomeSet = StringSet, Alloc<> > >; TDistr = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:755:15: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, UngappedShape<0> >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, UngappedShape<0> >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, OneGappedShape>; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, OneGappedShape>; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, OneGappedShape>, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, OneGappedShape>; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2300:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = True]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1593:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner >; TShape = Shape, GappedShape > >; TDir = String; TBucketMap = Nothing; TStepSize = long unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1604:25: required from 'void seqan::createQGramIndex(TIndex&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2565:19: required from 'bool seqan::indexCreate(Index >&, FibreSADir, Default) [with TText = StringSet >, Owner > >; TShapeSpec = Shape, GappedShape > >; TSpec = Tag; FibreSADir = const Tag; Default = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet >, Owner > >; TSpec = IndexQGram, GappedShape > >, Tag >; TFibre = FibreSADir_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:712:21: required from 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1876:21: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2134:18: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, GappedShape > >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2303:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:778:30: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2087:9: required from 'int seqan::mapSingleReads(TMatches&, TGenomeSet&, const TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2208:24: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TCounts&, RazerSOptions&, const TShape&, Swift) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TCounts = int; TSpec = RazerSSpec; TShape = Shape, UngappedShape<0> >; TSwiftSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:2297:19: required from 'int seqan::mapReads(TMatches&, TGenomeSet&, TReadSet&, TReadRegions&, TCounts&, RazerSOptions&) [with TMatches = String >; TGenomeSet = StringSet, Alloc<> > >; TReadSet = StringSet >, Owner > >; TReadRegions = int; TCounts = int; TSpec = RazerSSpec]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:830:13: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:1228:24: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/param_chooser.cpp:340:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 636 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here 638 | case SEQAN_INSERT: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 656 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here 658 | case SEQAN_INSERT: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h: In function 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, float>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:636:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 636 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:638:33: note: here 638 | case SEQAN_INSERT: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:656:41: warning: this statement may fall through [-Wimplicit-fallthrough=] 656 | ++del; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:658:33: note: here 658 | case SEQAN_INSERT: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 69%] Linking CXX executable ../../../bin/param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/param_chooser.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/param_chooser.dir/param_chooser.cpp.o -o ../../../bin/param_chooser -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Built target param_chooser make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Building CXX object extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -MF CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o.d -o CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/sstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:42: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:29, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:712:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 712 | struct LessRNoGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:740:47: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 740 | struct LessRNoGEndPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:766:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 766 | struct LessErrors : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:784:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 784 | struct LessSplicedScore : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:806:45: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 806 | struct LessSplicedScoreGPos : public ::std::binary_function < TReadMatch, TReadMatch, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromPrbFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:198:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 198 | if (skipWhitespaces(reader) != 0) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:201:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 201 | int kickout = 0; | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'int seqan::qualityDistributionFromFastQIntFile(TFile&, TDistribution&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:373:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 373 | if (pm_options.verbose) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:376:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 376 | resize(avg,pm_options.totalN,(TFloat)0.0); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h: In function 'bool seqan::parseGappedParams(RazerSOptions&, TFile&, ParamChooserOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:934:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 934 | if (value(reader) == 'e') | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/paramChooser.h:938:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 938 | bool atLeastOneFound = false; | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/test_param_chooser.cpp:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser/../../../core/apps/splazers/razers.h:620:11: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 70%] Linking CXX executable ../../../bin/test_funcs_param_chooser cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_funcs_param_chooser.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_funcs_param_chooser.dir/test_param_chooser.cpp.o -o ../../../bin/test_funcs_param_chooser make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Built target test_funcs_param_chooser make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/razers.cpp.o -MF CMakeFiles/razers3.dir/razers.cpp.o.d -o CMakeFiles/razers3.dir/razers.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:57: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:63: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:75: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:127:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:83: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:264:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 264 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:320:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 320 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:365:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 365 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:48: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1356:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1359:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1364:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSPrefix; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1367:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1312:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h: In instantiation of 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode, NMatchesNone_>; CharString = String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1315:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1370:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:101:32: warning: implicitly-declared 'seqan::Align, seqan::Alloc<> >, seqan::Tag >::Align(const seqan::Align, seqan::Alloc<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 101 | #define SEQAN_DO_PRAGMA(x) _Pragma(#x) | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/parallel/parallel_macros.h:102:33: note: in expansion of macro 'SEQAN_DO_PRAGMA' 102 | #define SEQAN_OMP_PRAGMA(x) SEQAN_DO_PRAGMA(omp x) | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:697:13: note: in expansion of macro 'SEQAN_OMP_PRAGMA' 697 | SEQAN_OMP_PRAGMA(parallel for private (intBuf) firstprivate(align)) | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align, seqan::Alloc<> >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String, seqan::Alloc<> >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:64: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:85: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:77: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:33: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:76: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1662:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:358:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 358 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:399:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 399 | indexL.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:413:22: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 413 | indexR.shape = shape; | ~~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:841:19: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 841 | tls.shape = shape; | ~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:868:21: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 868 | index.shape = shape; | ~~~~~~~~~~~~^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:90: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:850:23: required from 'typename seqan::Iterator >::Type seqan::end(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:832:15: required from 'typename seqan::Iterator::Type>::Type seqan::end(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:972:32: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:777:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 777 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:34: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:162: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:32: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = void]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:924:42: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2047:73: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFloat = double; TSpec = Hamming_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2785:21: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = Hamming_; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:462:35: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 462 | indexShape(host(pattern)) = pattern.shape; | ~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::_patternInit(Pattern >&, TFloat, TSize_) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFloat = double; TSize_ = int; TSpec = Tag >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2896:17: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSwiftSpec = Tag >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:878:28: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:713:23: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 713 | pattern.shape = indexShape(host(pattern)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3221:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >; TShape = Shape, UngappedShape<0> >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1208:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, Owner > >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2979:24: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const RazerSMode&, TReadIndex&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3146:27: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3216:31: required from 'int seqan::_mapSingleReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: In instantiation of 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesNone_]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:302:20: required from 'void seqan::workVerification(ThreadLocalStorage >&, Job >&, const String >&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode; THitString = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:757:33: required from 'void seqan::_mapSingleReadsParallelToContig(FragmentStore&, TThreadLocalStorages&, const String >&, const TContigId&, TCounts&, char, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TContigId = unsigned int; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1039:44: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1203:39: required from 'int seqan::_mapSingleReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2155:18: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2155 | TGenomeInfix origInf(inf); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2238:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2238 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2239:41: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2239 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2341:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2341 | TReadRev readRev(readPrefix); | ^~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2342:33: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 2342 | TGenomeInfixRev infRev(inf); | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io_sam.h:1013:50: required from 'void seqan::_writeAlignments(TFile&, FragmentStore&, Sam, const TAlignFunctor&) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TAlignFunctor = FunctorGlobalEditDistAlign; Sam = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1224:33: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h: In instantiation of 'seqan::Iter > > seqan::operator+(const Iter > >&, TDifference) [with TGaps = Gaps >, AnchorGaps, Alloc<> > > >; TGapAnchors = String, Alloc<> >; TDifference = long int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1189:28: required from 'typename seqan::Iterator >::Type seqan::iter(T&, TPos, Tag) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; TTag = Rooted_; typename Iterator >::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1169:16: required from 'typename seqan::Iterator::Type>::Type seqan::iter(T&, TPos) [with T = Gaps >, AnchorGaps, Alloc<> > > >; TPos = long int; typename Iterator::Type>::Type = Iter >, AnchorGaps, Alloc<> > > >, GapsIterator, Alloc<> > > > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_anchor.h:465:20: required from 'void seqan::insertGaps(Gaps >&, TPosition, TCount) [with TSequence = String >; TGapAnchors = String, Alloc<> >; TPosition = long int; TCount = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_base.h:628:15: required from 'void seqan::insertGap(Gaps&, TPosition) [with TSequence = String >; TSpec = AnchorGaps, Alloc<> > >; TPosition = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2582:18: required from 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TScore = Score >; TShrinkMatches = True]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1231:40: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:742:58: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 742 | Iter > > result = lhs; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:744:12: warning: implicitly-declared 'constexpr seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >::Iter(const seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >&)' is deprecated [-Wdeprecated-copy] 744 | return result; | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_iterator_anchor.h:117:22: note: because 'seqan::Iter >, seqan::AnchorGaps, seqan::Alloc<> > > >, seqan::GapsIterator, seqan::Alloc<> > > > >' has user-provided 'const seqan::Iter > >& seqan::Iter > >::operator=(const seqan::Iter > >&) [with TGaps_ = seqan::Gaps >, seqan::AnchorGaps, seqan::Alloc<> > > >; TGapAnchors_ = seqan::String, seqan::Alloc<> >]' 117 | Iter const & operator = (Iter const & other_) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:600:17: required from 'typename seqan::Iterator::Type>::Type seqan::begin(const T&) [with T = Segment >, InfixSegment>; typename Iterator::Type>::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; typename DefaultGetIteratorSpec::Type = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:971:31: required from 'int seqan::write(TFile&, FragmentStore&, Amos) [with TFile = std::basic_ofstream; TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1232:14: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazerSMode = RazerSMode; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1309:27: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSLocal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/outputFormat.h:1353:31: required from 'int seqan::dumpMatches(FragmentStore&, TCounts&, CharString, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:258:20: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:193:23: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:616:25: required from 'typename seqan::Iterator >::Type seqan::begin(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:375:32: required from 'seqan::Finder >::Finder(THaystack&, TRepeatSize, TPeriodSize) [with TRepeatSize = int; TPeriodSize = int; THaystack = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:679:20: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3247:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:532:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 532 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Pigeonhole >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter > seqan::operator+(const Iter >&, TIntegral) [with TContainer = Segment >, InfixSegment>; TIterator = SimpleType*; TSpec = Tag; TIntegral = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:896:43: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Pigeonhole >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:609:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 609 | return Iter >(container(left), hostIterator(left) + right); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Pigeonhole; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:887:30: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Pigeonhole >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:930:28: required from 'bool seqan::find(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Hamming_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:695:16: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TFilterSpec = Pigeonhole; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, OneGappedShape>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Pigeonhole]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3252:33: required from 'int seqan::_mapMatePairReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::host(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = Swift > >; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:1813:36: required from 'bool seqan::_firstNonRepeatRange(TFinder&, Pattern >&) [with TFinder = Finder >, InfixSegment>, Swift > > >; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:2054:30: required from 'bool seqan::windowFindBegin(Finder >&, Pattern >&, double) [with THaystack = Segment >, InfixSegment>; TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1200:29: required from 'void seqan::_mapMatePairReadsParallel(FragmentStore&, unsigned int, TThreadLocalStorages&, const String >&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1489:38: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&, TFilterSpec) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_; TFilterSpec = Swift > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1657:41: required from 'int seqan::_mapMatePairReadsParallel(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const RazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TScoreMode = RazerSErrors; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:778:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 778 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:101: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24: required from 'void seqan::initializeThreadLocalStoragesPaired(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1463:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h: In instantiation of 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = const Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1475:37: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 1475 | typename Value::Type temp_copy(_value); //temp copy because resize could invalidate _value | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2153:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize, const TValue&) [with T = String >; TSize = int; TValue = SimpleType; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:484:9: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1657:13: required from 'typename seqan::Size::TMatePairStore>::Type seqan::appendMatePair(FragmentStore&, const TRead&, const TRead&, const CharString&, const CharString&) [with TSpec = MyFragStoreConfig; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TMatePairStore>::Type = long unsigned int; typename FragmentStore::TMatePairStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:206:23: required from 'bool seqan::loadReads(FragmentStore&, const char*, const char*, TRazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:186:23: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:81: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_endDefault(T&, Rooted) [with T = Segment >, InfixSegment>; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:841:23: required from 'typename seqan::Iterator >::Type seqan::end(T&, Tag) [with T = Segment >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_reverse.h:463:24: required from 'typename seqan::Iterator >, const seqan::Tag >::Type seqan::begin(ModifiedString >&, Tag) [with THost = Segment >, InfixSegment>; TTagSpec = Rooted_; typename Iterator >, const Tag >::Type = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:440:24: required from 'seqan::Finder::Finder(THaystack&) [with THaystack = seqan::ModifiedString >, seqan::InfixSegment>, seqan::Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2241:41: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:768:12: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 768 | return TIterator(me, end(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1087:24: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, UngappedShape<0> >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, OneGappedShape>; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:653:36: required from 'void seqan::_mapMatePairReads(TMatches&, FragmentStore&, unsigned int, Pattern&, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TReadIndex = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:1114:30: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:858:30: required from 'void seqan::initializeThreadLocalStoragesSingle(TThreadLocalStorages&, TFragmentStore&, const TSplitters&, TShape&, TOptions&) [with TThreadLocalStorages = String, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Alloc<> >; TFragmentStore = FragmentStore; TSplitters = String >; TShape = const Shape, GappedShape > >; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:1014:40: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h: In instantiation of 'typename seqan::Parameter_::Type seqan::container(Finder&) [with THaystack = Segment >, InfixSegment>; TSpec = void; typename Parameter_::Type = Segment >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1105:63: required from 'bool seqan::_patternInitSmallStateBanded(TFinder&, const TNeedle2&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = const Segment >, InfixSegment>; TNeedle2 = Segment >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1297:44: required from 'bool seqan::_stateInit(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TNeedle2 = const Segment >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1654:18: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TNeedle2 = const Segment >, InfixSegment>; TSpec = FindInfix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, void>; TNeedle = Segment >, InfixSegment>; TNeedle2 = const Segment >, InfixSegment>; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2177:16: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:793:42: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 793 | return container(hostIterator(me)); | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:61: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h: In instantiation of 'typename seqan::Container >::Type seqan::container(ModifiedIterator&) [with THost = Iter >, InfixSegment>, AdaptorIterator*, Tag > >; TSpec = Tag; typename Container >::Type = ModifiedString >, InfixSegment>, Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_interface.h:752:24: required from 'void seqan::goEnd(TIterator&) [with TIterator = ModifiedIterator >, InfixSegment>, AdaptorIterator*, Tag > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:948:7: required from 'void seqan::goEnd(Finder&) [with THaystack = ModifiedString >, InfixSegment>, Tag >; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1656:18: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_, True, TFindBeginPatternSpec> >&) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TNeedle2 = ModifiedString >, InfixSegment>, Tag >; TSpec = FindPrefix; TFinderCSP = NMatchesAll_; TPatternCSP = NMatchesAll_; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1766:13: required from 'bool seqan::find(TFinder&, const TNeedle&, PatternState_ >&, int) [with TFinder = Finder >, InfixSegment>, Tag >, void>; TNeedle = ModifiedString >, InfixSegment>, Tag >; TNeedle2 = ModifiedString >, InfixSegment>, Tag >; TSpec = AlignTextBanded; TFindBeginPatternSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2245:32: required from 'bool seqan::matchVerify(TMatchVerifier&, Segment, unsigned int, const TRead&, const RazerSMode&) [with TMatchVerifier = MatchVerifier, String, Alloc<> >, RazerSOptions<>, RazerSMode, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, String > >; TGenome = String >; TRead = Segment >, InfixSegment>; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs.h:792:40: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3340:37: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_iterator.h:294:16: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 294 | TContainer cont(container(host(me))); | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_string.h:139:53: note: initializing argument 1 of 'seqan::ModifiedString::ModifiedString(typename seqan::Parameter_::Type) [with THost = seqan::Segment >, seqan::InfixSegment>; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment >, seqan::InfixSegment>]' 139 | ModifiedString(typename Parameter_::Type host) : _host(_toPointer(host)) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, UngappedShape<0> >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TSpec = Pigeonhole; typename Host >::Type = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2795:64: required from 'void seqan::_applyFilterOptions(Pattern >&, const TOptions&) [with TIndex = Index >, Owner > >, IndexQGram, OneGappedShape>, Tag > >; TPigeonholeSpec = void; TOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3026:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:398:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = const seqan::Segment >, seqan::InfixSegment>*; TParam = seqan::Segment >, seqan::InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = const Segment >, InfixSegment>*; TParam = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::InfixSegment>, seqan::Alloc<> >; TValue = const seqan::Segment >, seqan::InfixSegment>; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = const Segment >, InfixSegment>; TTargetSpec = Alloc<>; TValue = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = const Segment >, InfixSegment>; TString2 = Segment >, InfixSegment>; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet >, InfixSegment>, Owner<> >; TValue = Segment >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:865:24: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TValue2 = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; typename Reference > >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_pattern_base.h:368:14: required from 'typename seqan::Host >::Type& seqan::host(Pattern&) [with TNeedle = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TSpec = Swift > >; typename Host >::Type = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:2948:40: required from 'void seqan::_mapSingleReadsToContig(TMatches&, TFragmentStore&, unsigned int, Pattern&, TCounts&, char, TRazerSOptions&, const TRazerSMode&) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TReadIndex = Index >, Owner > >, IndexQGram, GappedShape > >, Tag > >; TFilterSpec = Swift > >; TCounts = String >; TRazerSOptions = RazerSOptions<>; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3054:36: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3343:31: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::Owner > >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:116:15: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class Index > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::Owner > >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:15: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 277 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 497 | class Pattern > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: note: synthesized method 'seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >& seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >::operator=(const seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >&)' first required here 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Pigeonhole >; TFilterFinderR = Finder >, InfixSegment>, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Pigeonhole >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >; TShape = Shape, OneGappedShape>; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::OneGappedShape>& seqan::Shape, seqan::OneGappedShape>::operator=(const seqan::Shape, seqan::OneGappedShape>&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_onegapped.h:135:17: note: because 'seqan::Shape, seqan::OneGappedShape>' has user-provided 'seqan::Shape::Shape(const seqan::Shape&) [with TValue = seqan::SimpleType]' 135 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: required from 'bool seqan::processRead(PairedMatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:962:32: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinderL = Finder >, Swift > > >; TFilterFinderR = Finder >, InfixSegment>, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:1314:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_match_filter.h:251:20: required from 'bool seqan::processRead(MatchFilter&, unsigned int) [with TOptionsSpec = RazerSSpec<>; TReadSeqSet = StringSet >, Owner > >; TCallback = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:472:36: required from 'void seqan::writeBackToLocal(ThreadLocalStorage >&, String >&, bool) [with TMatches = String, Alloc<> >; TFragmentStore = FragmentStore; TFilterFinder = Finder >, Swift > > >; TFilterPattern = Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >; TShape = Shape, GappedShape > >; TOptions = RazerSOptions<>; TCounts = String >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:775:29: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_parallel.h:116:7: warning: implicitly-declared 'seqan::Shape, seqan::GappedShape > >& seqan::Shape, seqan::GappedShape > >::operator=(const seqan::Shape, seqan::GappedShape > >&)' is deprecated [-Wdeprecated-copy] 116 | class ThreadLocalStorage< | ^~~~~~~~~~~~~~~~~~~ 117 | MapSingleReads< | ~~~~~~~~~~~~~~~ 118 | TMatches_, | ~~~~~~~~~~ 119 | TFragmentStore, | ~~~~~~~~~~~~~~~ 120 | TFilterFinder_, | ~~~~~~~~~~~~~~~ 121 | TFilterPattern_, | ~~~~~~~~~~~~~~~~ 122 | TShape, | ~~~~~~~ 123 | TOptions, | ~~~~~~~~~ 124 | TCounts, | ~~~~~~~~ 125 | TRazerSMode> > | ~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_gapped.h:330:17: note: because 'seqan::Shape, seqan::GappedShape > >' has user-provided 'seqan::Shape > >::Shape(const seqan::Shape > >&) [with TValue = seqan::SimpleType]' 330 | Shape(Shape const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >& seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::operator=(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1845:16: required from 'void seqan::insertValue(T&, TPosition, const TValue&) [with T = String >; TPosition = int; TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:511:16: required from 'void seqan::initPatterns(TStateString&, const TShape&, int, const TLogErrorDistr&, TDistance, bool) [with TStateString = String, double>, Alloc<> >; TShape = String >; TLogErrorDistr = String; TDistance = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/shape_threshold.h:1118:14: required from 'void seqan::qgramFilteringSensitivity(TSensitivityMatrix&, const TShape&, TPatternSize, TErrors, TThresh, TDistance, ThreshExact, const TErrorDist&) [with TSensitivityMatrix = String; TShape = Shape, GappedShape > >; TPatternSize = unsigned int; TErrors = unsigned int; TThresh = unsigned int; TDistance = Tag; TErrorDist = String; ThreshExact = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:741:42: required from 'void seqan::makeSelectedStatsFile(TError&, ParamChooserOptions&) [with TError = String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/paramChooser.h:1310:30: required from 'bool seqan::chooseParams(RazerSOptions&, ParamChooserOptions&) [with TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:838:30: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3431:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3443:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::UngappedShape<0> >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Pigeonhole >, seqan::Finder >, seqan::InfixSegment>, seqan::Pigeonhole >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >, seqan::Pigeonhole >, seqan::Shape, seqan::OneGappedShape>, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h: In instantiation of 'static void seqan::ValueConstructor_::construct(TIterator, const TParam&) [with TIterator = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >*; TParam = seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:363:28: required from 'void seqan::valueConstruct(TIterator, const TParam&) [with TIterator = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >*; TParam = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:606:19: required from 'typename seqan::Value::Type* seqan::_holderAllocateObject(THolder&, const TValue&) [with THolder = Holder, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >, Tag >; TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Value::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; typename Reference > >::Type = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_paired_match_filter.h:160:64: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSUngapped; TMatchNPolicy = NMatchesNone_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3452:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers_matepairs_parallel.h:84:7: warning: implicitly-declared 'constexpr seqan::Segment >, seqan::InfixSegment>::Segment(const seqan::Segment >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 84 | class ThreadLocalStorage > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:296:9: note: synthesized method 'seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >::ThreadLocalStorage(const seqan::ThreadLocalStorage, seqan::Alloc<> >, seqan::FragmentStore, seqan::Finder >, seqan::Swift > > >, seqan::Finder >, seqan::InfixSegment>, seqan::Swift > > >, seqan::Pattern >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >, seqan::Swift > > >, seqan::Shape, seqan::GappedShape > >, seqan::RazerSOptions<>, seqan::String >, seqan::RazerSMode > >&)' first required here 296 | new( (void*) & value(it) ) TNonConstValue(param_); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Finder >, InfixSegment>, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, UngappedShape<0> >, Tag > >, Swift > > >, Shape, UngappedShape<0> >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::UngappedShape<0> >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::UngappedShape<0> >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_pigeonhole.h:277:8: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Pigeonhole >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, OneGappedShape>, Tag > >, Pigeonhole >, Shape, OneGappedShape>, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, UngappedShape<0> >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3376:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::OneGappedShape>, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::OneGappedShape>]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Finder >, InfixSegment>, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3351:45: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >; TSource = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_swift.h:497:11: required from 'void seqan::assign(TTarget&, TSource&) [with TTarget = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TSource = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >; TValue2 = ThreadLocalStorage, Alloc<> >, FragmentStore, Finder >, Swift > > >, Pattern >, InfixSegment>, Owner<> >, IndexQGram, GappedShape > >, Tag > >, Swift > > >, Shape, GappedShape > >, RazerSOptions<>, String >, RazerSMode > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3354:39: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TShape&, const TRazerSMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TShape = Shape, GappedShape > >; TRazerSMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3381:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, const TRazersMode&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TRazersMode = RazerSMode]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3396:25: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&, RazerSMode) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>; TAlignMode = RazerSGlobal; TGapMode = RazerSGapped; TMatchNPolicy = NMatchesAll_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:3422:33: required from 'int seqan::_mapReads(FragmentStore&, TCounts&, RazerSOptions&) [with TFSSpec = MyFragStoreConfig; TFSConfig = FragmentStoreConfig; TCounts = String >; TSpec = RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:236:26: required from 'int mapReads(seqan::StringSet > >&, seqan::StringSet > >&, seqan::RazerSOptions&) [with TSpec = seqan::RazerSSpec<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.cpp:865:26: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >& seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >::operator=(const seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram_openaddressing.h:159:17: note: because 'seqan::Index >, seqan::InfixSegment>, seqan::Owner<> >, seqan::IndexQGram, seqan::GappedShape > >, seqan::Tag > >' has user-provided 'seqan::Index > >::Index(const seqan::Index > >&) [with TObject = seqan::StringSet >, seqan::InfixSegment>, seqan::Owner<> >; TShapeSpec = seqan::Shape, seqan::GappedShape > >]' 159 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 72%] Building CXX object extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3.dir/param_tabs.cpp.o -MF CMakeFiles/razers3.dir/param_tabs.cpp.o.d -o CMakeFiles/razers3.dir/param_tabs.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/param_tabs.cpp [ 72%] Linking CXX executable ../../../bin/razers3 cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3.dir/razers.cpp.o CMakeFiles/razers3.dir/param_tabs.cpp.o -o ../../../bin/razers3 -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 72%] Built target razers3 make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -MF CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o.d -o CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:5: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1302:14: required from 'bool seqan::loadContigs(FragmentStore&, const StringSet > >&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1323:20: required from 'bool seqan::loadContigs(FragmentStore&, const CharString&, bool) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:1331:20: required from 'bool seqan::loadContigs(FragmentStore&, const TFileNames&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TFileNames = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/simulate_reads.cpp:114:21: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 74%] Linking CXX executable ../../../bin/razers3_simulate_reads cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_simulate_reads.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_simulate_reads.dir/simulate_reads.cpp.o -o ../../../bin/razers3_simulate_reads -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Built target razers3_simulate_reads make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Building CXX object extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -MF CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o.d -o CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:39, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_cmdparser.h:36, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:5: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/istream:40, from /usr/include/c++/13/fstream:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:1: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:6: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:7: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:845:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 845 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:862:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 862 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:896:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 896 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:934:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 934 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:968:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 968 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1009:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1009 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1046:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1046 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1087:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1087 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1130:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1130 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1174:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1174 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:1218:17: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1218 | public std::binary_function::Type, typename Value::Type, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/map.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/cmdparser/cmdparser.h:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String >; TSize = int; typename Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:724:19: required from 'bool seqan::loadReads(FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45: required from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50: required from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long int; TExpand = TagGenerous_; typename Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18: required from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long int; typename Size::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:793:9: required from 'void seqan::assignSeq(TSeq&, const TFastaSeq&, Fastq) [with TSeq = String, Alloc<> >; TFastaSeq = Segment >, InfixSegment>; Fastq = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/file_format_mmap.h:1423:13: required from 'void seqan::assignSeq(TSeq&, const TFileSeq&, const TagSelector&) [with TSeq = String, Alloc<> >; TFileSeq = Segment >, InfixSegment>; TTagList = TagList, TagList, TagList > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:835:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19: required from 'bool seqan::loadReads(FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1415:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1442:19: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, const CharString&) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >; CharString = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:727:19: required from 'bool seqan::loadReads(FragmentStore&, const char*, TRazerSOptions&) [with TFSSpec = void; TFSConfig = FragmentStoreConfig; TRazerSOptions = RazerSOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/quality2prob.cpp:39:19: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3/razers.h:38: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 75%] Linking CXX executable ../../../bin/razers3_quality2prob cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 && /usr/bin/cmake -E cmake_link_script CMakeFiles/razers3_quality2prob.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/razers3_quality2prob.dir/quality2prob.cpp.o -o ../../../bin/razers3_quality2prob -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Built target razers3_quality2prob make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Building CXX object extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/rep_sep/CMakeFiles/rep_sep.dir/rep_sep.cpp.o -MF CMakeFiles/rep_sep.dir/rep_sep.cpp.o.d -o CMakeFiles/rep_sep.dir/rep_sep.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:27: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:22: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; TSource = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1242:11: required from 'void seqan::assignValue(T&, TPos, const TValue&) [with T = String, AlignedReadStoreElement, void>, long unsigned int>, Alloc<> >; TValue = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>; TPos = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_property.h:178:13: required from 'void seqan::assignProperty(TPropertyMap&, TDescriptor, TValue) [with TPropertyMap = String, AlignedReadStoreElement, void>, long unsigned int>, Alloc<> >; TDescriptor = unsigned int; TValue = GraphCargo, AlignedReadStoreElement, void>, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:191:23: required from 'GraphCargo& registerRead(ReadGraph&, typename ReadGraph::TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; typename ReadGraph::TId = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_construction.h:82:59: required from 'void construct(ReadGraph&, const seqan::String > >&, const seqan::FragmentStore&, TId) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int; TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:212:14: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>& GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>::operator=(const GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph.h:32, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:34: /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rgraph_base.h:44:5: note: because 'GraphCargo, seqan::AlignedReadStoreElement, void>, long unsigned int>' has user-provided 'GraphCargo::GraphCargo(const GraphCargo&) [with TColumnAlphabet = seqan::Triple; TAlignedReadStoreElement = seqan::AlignedReadStoreElement, void>; TPosition = long unsigned int]' 44 | GraphCargo(GraphCargo const& other) | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:186:27: required from 'void parseContig(const seqan::FragmentStore&, TId, seqan::String&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int; TAnnotatedCandidateColumn = seqan::Pair > >; TScannerType = SimpleColumn]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::String >; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = SimpleType; TTargetSpec = Alloc<>; TSource = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:318:11: required from 'void seqan::appendValue(StringSet > >&, const TString2&, Tag) [with TString = String >; TString2 = String >; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:1396:13: required from 'typename seqan::Size::TReadStore>::Type seqan::appendRead(FragmentStore&, const TRead&, TId) [with TSpec = void; TConfig = FragmentStoreConfig; TRead = String >; TId = unsigned int; typename Size::TReadStore>::Type = long unsigned int; typename FragmentStore::TReadStore = String, Alloc<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_io.h:452:15: required from 'int seqan::read(TFile&, FragmentStore&, Amos) [with TFile = _IO_FILE*; TSpec = void; TConfig = FragmentStoreConfig; Amos = const Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:155:9: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:268:11: required from 'void seqan::move(TTarget&, TSource&) [with TTarget = Triple; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1056:13: required from 'void seqan::_arrayMoveForwardDefault(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1600:29: required from 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, False) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = Triple]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1211:25: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = Triple*; TSource1 = Triple*; TSource2 = Triple*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1295:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = Triple; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: required from 'static void seqan::AppendString_::append_(TTarget&, TSource&) [with TTarget = seqan::String >; TSource = const seqan::Triple; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1421:42: required from 'void seqan::append(String&, const TSource&, Tag) [with TTargetValue = Triple; TTargetSpec = Alloc<>; TSource = Triple; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1626:11: required from 'void seqan::append(TTarget&, const TSource&) [with TTarget = String >; TSource = Triple]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/assembly_parser.h:197:19: required from 'void parseContig(const seqan::FragmentStore&, TId, seqan::String&, TScannerType) [with TSpec = void; TConfig = seqan::FragmentStoreConfig; TId = int; TAnnotatedCandidateColumn = seqan::Pair > >; TScannerType = SimpleColumn]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep/rep_sep.cpp:198:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'constexpr seqan::Triple& seqan::Triple::operator=(const seqan::Triple&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:57, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_base.h:162:12: note: because 'seqan::Triple' has user-provided 'seqan::Triple::Triple(const seqan::Triple&) [with T1 = char; T2 = unsigned int; T3 = long unsigned int; TSpec = void]' 162 | inline Triple(Triple const & _p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 77%] Linking CXX executable ../../../bin/rep_sep cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep && /usr/bin/cmake -E cmake_link_script CMakeFiles/rep_sep.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/rep_sep.dir/rep_sep.cpp.o -o ../../../bin/rep_sep -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Built target rep_sep make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Building CXX object extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/search.dir/search.cpp.o -MF CMakeFiles/search.dir/search.cpp.o.d -o CMakeFiles/search.dir/search.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:53: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:321:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = seqan::Tag; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:447:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:280:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:403:10: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, Tag, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, Tag, Writer > >, Owner > >, void>, Db > >, Owner > >, Tag >, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:802:30: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:530:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:249:14: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Db, Alloc > >, Owner > >, Tag >; TValue2 = Db, Alloc > >, Owner > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Db, Alloc > >, Owner > >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Db, Alloc > >, Owner > >, Tag >; typename Reference > >::Type = Db, Alloc > >, Owner > >, Tag >&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:797:45: required from 'void execute(DbFinder, TDelegate, seqan::Tag >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:506:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:520:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:537:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:454:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, Online) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; Online = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:544:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = seqan::Tag; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:328:12: required from 'int runSearcher(Options&, const TText&, const TIndex&, TSpec, const seqan::Nothing&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/search.cpp:513:39: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String >; TValue = long unsigned int; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50, inlined from 'typename seqan::Size > > >::Type seqan::resize(StringSet > >&, TSize, Tag) [with TString = String; TSpec = void; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:421:22, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = StringSet, Owner > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 79%] Linking CXX executable ../../../bin/search cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/search.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/search.dir/search.cpp.o -o ../../../bin/search -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 79%] Built target search make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Building CXX object extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/searchjoin/CMakeFiles/join.dir/join.cpp.o -MF CMakeFiles/join.dir/join.cpp.o.d -o CMakeFiles/join.dir/join.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:53: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:51: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:44: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:44: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:336:10: required from 'void index(DbFinder&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:780:19: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 780 | dbIndex.index = TIndex(db.text); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h: In instantiation of 'void buildQuery(DbIndex >, seqan::Tag >&, Db&, TSeedLength) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::Tag; TDbSpec = void; TSeedLength = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:366:15: required from 'void prepare(DbFinder&, Db&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:277:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:902:32: warning: implicitly-declared 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >& seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >::operator=(const seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >&)' is deprecated [-Wdeprecated-copy] 902 | dbIndex.index[seedSet] = TIndex(db.text); | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:86:5: note: because 'seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = seqan::Tag]' 86 | Index(Index const & other) : | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:316:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:126: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:103:8: warning: implicitly-declared 'constexpr seqan::VertexEsa& seqan::VertexEsa::operator=(const seqan::VertexEsa&)' is deprecated [-Wdeprecated-copy] 103 | struct VertexSA : public VertexEsa | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:290:17: note: because 'seqan::VertexEsa' has user-provided 'seqan::VertexEsa::VertexEsa(const seqan::VertexEsa&) [with TSize = long unsigned int]' 290 | VertexEsa(VertexEsa const &other): | ^~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: note: synthesized method 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' first required here 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TShape = Shape, UngappedShape<0> >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet, Alloc > >, Owner > >; TShape = Shape, UngappedShape<0> >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:328:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:350:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h: In instantiation of 'void seqan::_qgramFillSuffixArray(TSA&, const StringSet&, TShape, TDir&, TBucketMap&, TStepSize, TWithConstraints) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TShape = Shape >; TDir = String >; TBucketMap = Nothing; TStepSize = unsigned int; TWithConstraints = False]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1639:24: required from 'void seqan::createQGramIndex(TSA&, TDir&, TBucketMap&, const TText&, TShape&, TStepSize) [with TSA = String >, Alloc<> >; TDir = String >; TBucketMap = Nothing; TText = StringSet > >, Owner > >; TShape = Shape >; TStepSize = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:804:21: required from 'void build(DbIndex, TDbIndexSpec>&, Db&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndexSpec = seqan::IndexSa >; TDbIndexSpec = void; TDbSpec = void; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:347:10: required from 'void index(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:262:10: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:362:37: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1448:87: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1448 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1450:98: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1450 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // first hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1458:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1458 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1460:110: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1460 | sa[dir[getBucket(bucketMap, hashNext(shape, itText)) + 1]++] = localPos; // next hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1480:95: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1480 | if (dir[bktNo] != (TSize)-1) sa[dir[bktNo]++] = localPos; // if bucket is enabled | ~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1482:106: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1482 | sa[dir[getBucket(bucketMap, hash(shape, itText)) + 1]++] = localPos; // hash | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_historyClear(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:292:18: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2147:24: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2147 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_iterator.h:65, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:86: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:93, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index_extras.h:65: /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'bool seqan::_moveIteratorsRight(Finder2, Index, Backtracking, TSpec> >&, const StageExact_&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TSpec = Tag]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:587:28: required from 'bool seqan::_nextState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1277:38: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageExact_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1254:14: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:244:15: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 244 | class Iter< TIndex, VSTree< TopDown > > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:651:32: note: synthesized method 'seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >& seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >::operator=(const seqan::Iter, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >&)' first required here 651 | back(finder.textStack) = finder.textStack[length(finder.textStack) - 2]; | ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h: In instantiation of 'seqan::Iter >::Iter(const seqan::Iter >&) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:47: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:147:15: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 147 | : data_container(other_.data_container), | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h: In instantiation of 'void seqan::_clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2751:9: required from 'void seqan::clear(Iter >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:293:10: required from 'void seqan::goRoot(Iter >, VSTree >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = TopDown<>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:266:10: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2745:27: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 2745 | value(it) = typename VertexDescriptor::Type(MinimalCtor()); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h: In instantiation of 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 541 | return TIterator(me, begin(me, Standard())); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:138:48: note: initializing argument 1 of 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' 138 | Iter(typename Parameter_::Type container_, TIterator it_) | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index, Alloc > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet, Alloc > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet, Alloc > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder, Alloc > >, Owner > >, Index, Alloc > >, Owner > >, IndexSa > >, void, Writer, Alloc > >, Owner > >, void>, Db, Alloc > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'seqan::VertexSA >& seqan::VertexSA >::operator=(const seqan::VertexSA >&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA >' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = seqan::SimpleType]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Preorder; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:18: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h: In instantiation of 'void seqan::_historyPush(Iter >, VSTree > >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated]': /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:360:17: required from 'bool seqan::_goDown(Iter >, VSTree > >&, VSTreeIteratorTraits) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag; TSpec = Truncated; TDfsOrder = Preorder_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:2296:14: required from 'bool seqan::goDown(Iter > >&) [with TIndex = Index > >, Owner > >, IndexSa > >; TSpec = Truncated]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:527:52: required from 'bool seqan::_moveIteratorsDown(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:432:27: required from 'bool seqan::_pushState(Finder2, Index, Backtracking >&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/find_backtracking_exp.h:1271:31: required from 'void seqan::_find(Finder2, Index, Backtracking >&, TDelegate&, const TStage&) [with TText = StringSet > >, Owner > >; TTextIndexSpec = IndexSa >; TPattern = StringSet > >, Owner > >; TPatternIndexSpec = IndexSa >; TDistance = Tag; TSpec = Tag; TStage = StageInitial_; TDelegate = DbFinder > >, Owner > >, Index > >, Owner > >, IndexSa > >, void, Writer > >, Owner > >, void>, Db > >, Owner > >, void>, Tag >, Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:603:14: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:619:20: warning: implicitly-declared 'constexpr seqan::VertexSA& seqan::VertexSA::operator=(const seqan::VertexSA&)' is deprecated [-Wdeprecated-copy] 619 | it._parentDesc = value(it); | ~~~~~~~~~~~~~~~^~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:122:5: note: because 'seqan::VertexSA' has user-provided 'seqan::VertexSA::VertexSA(const seqan::VertexSA&) [with TSize = long unsigned int; TAlphabet = char]' 122 | VertexSA(VertexSA const & other) : | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:92: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String, Alloc > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment, Alloc > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>; TIterator = seqan::SimpleType*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment, Alloc > >, InfixSegment>; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment, Alloc > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter, Alloc > >, InfixSegment>, AdaptorIterator*, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment, Alloc > >, InfixSegment>; TSeq2 = Segment, Alloc > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>::Segment(const seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment, seqan::Alloc > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String, seqan::Alloc > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h: In instantiation of 'typename seqan::Pointer_ >::Type seqan::_toPointer(Segment&) [with THost = String > >; TSpec = InfixSegment; typename Pointer_ >::Type = Segment > >, InfixSegment>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/iterator_adaptor.h:139:40: required from 'seqan::Iter >::Iter(typename seqan::Parameter_::Type, TIterator) [with TContainer = seqan::Segment > >, seqan::InfixSegment>; TIterator = char*; TSpec = seqan::Tag; typename seqan::Parameter_::Type = seqan::Segment > >, seqan::InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:541:12: required from 'typename seqan::Iterator >::Type seqan::_beginDefault(const T&, Rooted) [with T = Segment > >, InfixSegment>; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >; Rooted = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:624:25: required from 'typename seqan::Iterator >::Type seqan::begin(const T&, Tag) [with T = Segment > >, InfixSegment>; TSpec = Rooted_; typename Iterator >::Type = Iter > >, InfixSegment>, AdaptorIterator > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_myers_ukkonen.h:1634:63: required from 'unsigned int seqan::_computeEditDistanceBanded(const TSeq1&, const TSeq2&, unsigned int) [with TSeq1 = Segment > >, InfixSegment>; TSeq2 = Segment > >, InfixSegment>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:136:52: required from 'bool _verify(Verifier&, typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/verifier.h:78:23: required from 'bool Verifier::operator()(typename seqan::Size >::Type, typename seqan::Size >::Type, TDelegate&) [with TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >; TText = seqan::StringSet > >, seqan::Owner > >; TSpec = void; typename seqan::Size >::Type = unsigned int; typename seqan::Size >::Type = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:783:30: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:343:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_base.h:470:12: warning: implicitly-declared 'constexpr seqan::Segment > >, seqan::InfixSegment>::Segment(const seqan::Segment > >, seqan::InfixSegment>&)' is deprecated [-Wdeprecated-copy] 470 | return me; | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/segment_infix.h:197:5: note: because 'seqan::Segment > >, seqan::InfixSegment>' has user-provided 'seqan::Segment& seqan::Segment::operator=(const seqan::Segment&) [with THost_ = seqan::String > >]' 197 | operator = (Segment const & source) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >, Owner > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1367:67: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String > >; TSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String > >; TSetSpec = Owner >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc > >, Owner > >; TValue = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:461:16: required from 'bool _parseText(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:394:50: required from 'bool parseLine(DbParser&, TReader&) [with TDb = Db, seqan::Alloc > >, seqan::Owner > >, void>; TSpec = void; TReader = seqan::RecordReader, seqan::SinglePass >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/db.h:534:23: required from 'bool load(Db&, const TFileName&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TSpec = void; TFileName = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:231:14: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc >; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:735:42: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Db, Alloc > >, Owner > >, void>; TValue2 = Db, Alloc > >, Owner > >, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Db, Alloc > >, Owner > >, void>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Db, Alloc > >, Owner > >, void>; typename Reference > >::Type = Db, Alloc > >, Owner > >, void>&]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:778:40: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Nothing; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:309:29: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:97:8: note: 'struct seqan::Pair >' declared here 97 | struct Pair > | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TSpec = MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple >, seqan::Tag >& seqan::Pair >, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > >; TSource = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > >, seqan::Source<> >, seqan::Caster >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > >, Source<> >, Caster >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > >, Source<> >, Caster >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple >, Tag >; TSpec = SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > >; TSource = Pipe > >, Source<> >, Caster >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_bit_compressed.h:112:12: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned char; unsigned int BITSIZE1 = 24; unsigned int BITSIZE2 = 8]' 112 | inline Pair(Pair const & _p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:332:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:354:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer > >, seqan::Owner > >, void>, Db > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet > >, seqan::Owner > >; TIndex = seqan::Index > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:366:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Filter >, unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, unsigned int, File > > >; TSource = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, unsigned int>, unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 13 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = unsigned int; T2 = unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, unsigned int>, unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 3, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:50:21: required from 'bool seqan::MergeStreamComparer::operator()(const seqan::PageBucket&, const seqan::PageBucket&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; Compare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:356:13: required from 'void seqan::_adjustHeapTowardLeaves(PriorityType&, TValue, TSize, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >; TSize = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:335:26: required from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: required from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: [ skipping 15 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc > >, Owner > >; TSpec = IndexSa >; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/include/seqan/index/index_sa_stree.h:177:17: required from 'void seqan::_indexRequireTopDownIteration(Index >&) [with TText = StringSet, Alloc > >, Owner > >; TIndexSpec = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_stree.h:265:33: required from 'seqan::Iter > >::Iter(TIndex&) [with TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Preorder]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/finder.h:597:23: required from 'void execute(DbFinder >&) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TDbQuerySpec = void; TDelegate = Writer, seqan::Alloc > >, seqan::Owner > >, void>, Db, seqan::Alloc > >, seqan::Owner > >, void>, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:284:12: required from 'int runJoiner(Options&, const TText&, const TIndex&, TSpec) [with TText = seqan::StringSet, seqan::Alloc > >, seqan::Owner > >; TIndex = seqan::Index, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >; TSpec = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin/join.cpp:320:41: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, unsigned int>, unsigned int, File > > > >, Filter >, unsigned int> > >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, unsigned int>, unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > >, Source<> >, Caster >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, unsigned int>, unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple >, Tag >, SorterSpec >, Tuple, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple >, Tag >, MapperSpec >, Tuple, Tuple >, Tag >, unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = long unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = long unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type, const TValue&) [with T = seqan::String >; TValue = long unsigned int; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1925:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, const TValue2&, Tag) [with TValue = long unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TValue2 = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1964:50, inlined from 'typename seqan::Size > > >::Type seqan::resize(StringSet > >&, TSize, Tag) [with TString = String; TSpec = void; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_concat_direct.h:421:22, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = StringSet, Owner > >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551600' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = StringSet, Owner > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter, Alloc > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String, Alloc > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551440' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String > >, seqan::Owner > >, seqan::IndexSa > >, seqan::VSTree > > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = Iter > >, Owner > >, IndexSa > >, VSTree > > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551424' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::eraseBack(T&) [with T = String > >, Owner > >, IndexSa > >, VSTree > > >, Alloc<> >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple >, Tag >, _skew7ExtendComp >, Tuple, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, unsigned int>, unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple >, Tag > >; TLess = MergeStreamComparer >, Tuple >, Tag >, _skew7NCompMulti >, Tuple >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, unsigned int, seqan::Tag >, seqan::String >, unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tuple >, Tag >, SorterSpec >, Tuple >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, unsigned int, Tag >, String >, unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, unsigned int>, unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 80%] Linking CXX executable ../../../bin/join cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin && /usr/bin/cmake -E cmake_link_script CMakeFiles/join.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/join.dir/join.cpp.o -o ../../../bin/join -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Built target join make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -MF CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o.d -o CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:44, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:46: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/refwrap.h:39, from /usr/include/c++/13/deque:67, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:41: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/score.h:42, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:50: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find.h:43: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index > >, IndexEsa<> >; TSource = Index > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index > >, IndexEsa<> >; TSource = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index > >, seqan::IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:322:22: required from 'void SEQAN_TEST_findAllExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:552:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index > >, seqan::IndexEsa<> >& seqan::Index > >, seqan::IndexEsa<> >::operator=(const seqan::Index > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:177:13: required from 'void SEQAN_TEST_buildVariations_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:549:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16: required from 'typename seqan::Suffix::Type seqan::suffix(const StringSet&, const TPosition&) [with TString = String >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25: required from 'seqan::Pair >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator, TQuery&, typename Difference::Type) [with TText = const StringSet > >; TSA = const String >, Alloc<> >; TSpec = SortedList; TQuery = const String >; typename Iterator >::Type = const Pair >*; typename Difference::Type = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23: required from 'seqan::Pair >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet > >; TSA = String >, Alloc<> >; TQuery = String >; typename Iterator >::Type = const Pair >*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >; EsaFindMlr = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49: required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet&, seqan::StringSet&, unsigned int, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37: required from 'int seqan::readBatch(StringSet&, StringSet&, SequenceStream&, unsigned int) [with TId = String >; TIdSpec = Owner<>; TSequence = String >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:72:15: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49: required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet&, seqan::StringSet&, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35: required from 'int seqan::readAll(StringSet&, StringSet&, SequenceStream&) [with TId = String >; TIdSpec = Owner<>; TSequence = String, Alloc<> >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:90:13: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index > >, IndexEsa<> >; TSource = Index > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index > >, IndexEsa<> >; TValue2 = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index > >, IndexEsa<> >; typename Reference > >::Type = Index > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: required from 'typename seqan::Parameter_::Type>::Type seqan::haystack(TObject&) [with TObject = Finder > >, IndexEsa<> > >; typename Parameter_::Type>::Type = Index > >, IndexEsa<> >&; typename Haystack::Type = Index > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1928:40: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >; EsaFindMlr = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:290:27: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index > >, seqan::IndexEsa<> >& seqan::Index > >, seqan::IndexEsa<> >::operator=(const seqan::Index > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9: required from 'void clipBarcodes(TSeqs&, const seqan::String&, unsigned int) [with TSeqs = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14: required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:355:9: required from 'void clipBarcodes(TSeqs&, const seqan::String&, unsigned int) [with TSeqs = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:344:14: required from 'void SEQAN_TEST_clipBarcodes_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:553:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TValue2 = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; typename Reference > >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:501:10: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe, TPair, TLimitsString> >& seqan::Pipe, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:497:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 497 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::Tag >; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:376:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 376 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, Tag >, Tag >, SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::Tag >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:418:11: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:426:13: required from 'void seqan::Pipe, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPack = seqan::Tag; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = Tag; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, Tag >, Tag >; TSpec = SorterSpec >, Tuple, 7, Tag >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:438:24: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 438 | tmpRef->i1 = localPos; | ~~~~~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, Tag >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::Tag >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::Tag >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:498:14: required from 'void SEQAN_TEST_doAll_Exact_Multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:557:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 10 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 3, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 1, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 2, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 12 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:284:14: required from 'void SEQAN_TEST_findExactIndex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_demultiplex.cpp:551:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 6, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 4, Tag >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, Tag >, Tag >, SorterSpec >, Tuple, Tuple, 5, Tag >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, Tag >, Tag >, MapperSpec >, Tuple, Tuple, 6, Tag >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, Tag >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, Tag >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, Tag >, Tag >, _skew7NCompMulti >, Tuple, 7, Tag >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/new_allocator.h:34, from /usr/include/c++/13/ppc64le-redhat-linux/bits/c++allocator.h:33, from /usr/include/c++/13/bits/allocator.h:46, from /usr/include/c++/13/deque:63: /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::Tag >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, Tag >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, Tag >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, Tag >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, Tag >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::Tag >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, Tag >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, Tag >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, Tag >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, Tag >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::Tag >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 82%] Linking CXX executable ../../../bin/test_sflex_demultiplex cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_demultiplex.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_demultiplex.dir/test_demultiplex.cpp.o -o ../../../bin/test_sflex_demultiplex -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Built target test_sflex_demultiplex make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -MF CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o.d -o CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:48: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:46: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:501:40: required from 'int seqan::SequenceStreamImpl_::readRecord(TId&, TSequence&, const TFormatTag&) [with TId = seqan::String >; TSequence = seqan::String >; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:697:38: required from 'int seqan::readRecord(TId&, TSequence&, SequenceStream&) [with TId = String >; TSequence = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:150:24: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7: required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String >; TSpec = Mean]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/read_trimming.h:219:7: required from 'unsigned int trimRead(TSeq&, unsigned int, const TSpec&) [with TSeq = seqan::String >; TSpec = Mean]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:153:27: required from 'void SEQAN_TEST_sliding_window_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_trimming.cpp:218:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 83%] Linking CXX executable ../../../bin/test_sflex_trimming cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_trimming.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_trimming.dir/test_trimming.cpp.o -o ../../../bin/test_sflex_trimming -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 83%] Built target test_sflex_trimming make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -MF CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o.d -o CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:49: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:51: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of 'unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:224:29: required from 'void SEQAN_TEST_strip_pair_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:245:2: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared 'seqan::Align > >::Align(const seqan::Align > >&)' is deprecated [-Wdeprecated-copy] 297 | TAlign align = ret.i2; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align > >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:59:15: required from 'void SEQAN_TEST_get_overlap_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:239:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = long unsigned int; TEndPosition = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:538:15: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = String >; typename Reference > >::Type = String >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gaps_array.h:368:17: required from 'typename seqan::Source > >::Type& seqan::source(Gaps >&) [with TSequence = String >; typename Source > >::Type = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:230:22: required from 'unsigned int getOverlap(TAlign&) [with TAlign = seqan::Align > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:533:26: required from 'unsigned int stripAdapter(TSeq&, TAdapter&, const TSpec&) [with TSeq = seqan::String >; TAdapter = seqan::String, seqan::Alloc<> >; TSpec = Auto]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:198:28: required from 'void SEQAN_TEST_strip_adapter_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_adapter.cpp:243:2: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ [ 85%] Linking CXX executable ../../../bin/test_sflex_adapter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_adapter.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_adapter.dir/test_adapter.cpp.o -o ../../../bin/test_sflex_adapter -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Built target test_sflex_adapter make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -MF CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o.d -o CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:54, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:52: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:47: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22: required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet, seqan::Alloc<> > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String, Alloc<> >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:604:22: required from 'void preTrim(TSeqs&, TIds&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet, seqan::Alloc<> > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:446:12: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [31]; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [31]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = char [31]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> > >; TValue = char [31]]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:59:16: required from 'void SEQAN_TEST_findN_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:625:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String >, seqan::Alloc<> >; TValue = const char [7]; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String >; TTargetSpec = Alloc<>; TValue = char [7]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String >; TString2 = char [7]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet > >; TValue = char [7]]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:335:16: required from 'void SEQAN_TEST_processN_paired_multiplex_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:629:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1481:31: required from 'static void seqan::AppendValueToString_::appendValue_(T&, TValue&) [with T = seqan::String, seqan::Alloc<> >, seqan::Alloc<> >; TValue = const char [11]; TExpand = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1500:54: required from 'void seqan::appendValue(String&, const TValue&, Tag) [with TTargetValue = String, Alloc<> >; TTargetSpec = Alloc<>; TValue = char [11]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_owner.h:146:16: required from 'void seqan::appendValue(StringSet >&, const TString2&, Tag) [with TString = String, Alloc<> >; TString2 = char [11]; TExpand = TagGenerous_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:1718:16: required from 'void seqan::appendValue(T&, const TValue&) [with T = StringSet, Alloc<> > >; TValue = char [11]]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:427:16: required from 'void SEQAN_TEST_preTrim_test() [with bool speed_up_dummy_to_prevent_compilation_of_unused_tests_ = true]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/test_general_processing.cpp:630:5: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ [ 87%] Linking CXX executable ../../../bin/test_sflex_general_processing cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/test_sflex_general_processing.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/test_sflex_general_processing.dir/test_general_processing.cpp.o -o ../../../bin/test_sflex_general_processing -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Built target test_sflex_general_processing make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -MF CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o.d -o CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:45, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:53: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:54, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:38, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/fai_index.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:83: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:246:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 246 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/gap_anchor.h:256:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:166: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h: In function 'int seqan::_globalAlignmentScore(const String&, const String&, const MyersBitVector&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:70:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 70 | if (length(seqH) < length(seqV)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/global_alignment_myers_impl.h:74:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 74 | const unsigned int BLOCK_SIZE = BitsPerValue::VALUE; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:174: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h: In function 'seqan::Pair > seqan::_alignBandedSmithWatermanTrace(LocalAlignmentFinder&, const TSequenceH&, const TSequenceV&, TId, TId, TScore&, TDiagonal, TDiagonal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:409:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 409 | if ((actualCol == 0) || (actualRow == 0)) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/local_alignment_banded_waterman_eggert_impl.h:412:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 412 | if (actualCol < len1) _alignTracePrint(finder.trace, seqH, seqV, id1, actualCol, id2, actualRow, len1 - actualCol, Horizontal); | ^~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:60: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:485:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 485 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:495:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 495 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:505:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 505 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:515:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 515 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:525:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 525 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_align.h:535:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 535 | public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:62: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h: In function 'void seqan::convertMatchesToGlobalAlignment(FragmentStore&, const TScore&, const TShrinkMatches&)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2357:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 2357 | if (alignQualityStoreLengthPre == 0u) | ^~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store/store_all.h:2361:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 2361 | sortAlignedReads(store.alignedReadStore, SortBeginPos()); | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:62, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:40, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:52, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:72: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:45:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 45 | struct filterI1 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:54:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 54 | struct filterI2 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:63:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 63 | struct filterI3 : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:74: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:401:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 401 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:507:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 507 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:78: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:42:48: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 42 | struct MergeStreamComparer : public ::std::binary_function < PageBucket, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:57:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | public ::std::binary_function < | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:257:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 257 | struct insertBucket : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:372:53: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 372 | struct insertBucket : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:45: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_set.h:373:41: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 373 | struct SetLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:70: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:404:18: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 404 | public::std::binary_function // functor for operator> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:744:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 744 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_base.h:760:18: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 760 | public::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:80: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:854:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 854 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:902:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 902 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:970:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 970 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1039:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1039 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1073:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1073 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:1121:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 1121 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2093:39: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2093 | struct _qgramComp : public ::std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_qgram.h:2112:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 2112 | public ::std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:46:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 46 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_qsort.h:85:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 85 | public ::std::binary_function < TSAValue, TSAValue, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:96: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:98:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 98 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:112:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 112 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:127:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 127 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:144:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:154:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:99: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:110:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 110 | public ::std::binary_function < SkewDCStream, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:143:23: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 143 | public ::std::binary_function < SkewDCStream >, Pack> >, | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:100: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:65:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 65 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:99:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 99 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:118:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 118 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:132:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 132 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:154:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 154 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:175:21: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 175 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:185:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 185 | public std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:103: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:57:43: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 57 | struct _skew7NCompMulti : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:97:21: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 97 | public std::binary_function< | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:141:29: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 141 | public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:109: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:59:42: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 59 | struct _mapInverse : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:164:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 164 | struct _mapInverseMulti : public std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, KasaiOriginal)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:312:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 312 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:313:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 313 | LCP[isa - 1] = h; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const TText&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:379:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 379 | for(TSize hMax = _min(n - i, n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:380:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 380 | LCP[i] = h | mark; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h: In function 'void seqan::_createLCPTableRandomAccess(TLCPTable&, const StringSet&, const TSA&, Kasai)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:483:17: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 483 | for(TSize hMax = _min(getValueI2((TPair)dec), n - j); h < hMax && *I == *J; ++I, ++J, ++h) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_lcp.h:484:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 484 | LCP[i] = h | mark; | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:113: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_bwt.h:144:50: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 144 | struct _filterGlobalizer : public ::std::unary_function { | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:120: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:585:31: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 585 | public ::std::binary_function< Pair, Pair, bool> | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:128: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h: In function 'void seqan::_storeWotdChildren(Index > >&, TSize, TSize)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:504:27: warning: this 'else' clause does not guard... [-Wmisleading-indentation] 504 | } else | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_dfi.h:506:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'else' 506 | for (TDirSize d = index.sentinelBound - index.sentinelOcc; d != index.sentinelBound; ++d) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:136: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/repeat_base.h:149:44: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 149 | struct RepeatLess_ : public ::std::binary_function | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:157: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h: In function 'typename seqan::Iterator >::Type seqan::_upperBoundLcpe(TText&, TSA&, SearchTreeIterator, TQuery&, TDiff_, TDiff_)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1498:13: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 1498 | for(; i && ordEqual(*t, convert(*q)); --i, ++t, ++q) ; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1501:25: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 1501 | if (q == qEnd || t == tEnd || !ordGreater(*t, convert(*q))) { | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp: In function 'seqan::ArgumentParser initParser()': /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:610:10: warning: 'template class std::auto_ptr' is deprecated: use 'std::unique_ptr' instead [-Wdeprecated-declarations] 610 | std::auto_ptr argParseBuilder; | ^~~~~~~~ In file included from /usr/include/c++/13/memory:78, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/test_system.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:62, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:54: /usr/include/c++/13/bits/unique_ptr.h:66:28: note: declared here 66 | template class auto_ptr; | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:71: /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h: In instantiation of 'unsigned int stripPair(TSeq&, TSeq&) [with TSeq = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:411:12: required from 'unsigned int stripPairBatch(seqan::StringSet >&, seqan::StringSet&, seqan::StringSet >&, seqan::StringSet&, AdapterTrimmingStats&, bool) [with TSeq = seqan::String >; TId = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1926:27: required from 'void adapterTrimmingStage(AdapterTrimmingParams&, TSeqs&, TIds&, TSeqs&, TIds&, bool) [with TSeqs = seqan::String > > >; TIds = seqan::String > > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2726:37: required from here /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/adapter_trimming.h:297:16: warning: implicitly-declared 'seqan::Align >, seqan::Tag >::Align(const seqan::Align >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 297 | TAlign align = ret.i2; | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align.h:89: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/align/align_base.h:131:13: note: because 'seqan::Align >, seqan::Tag >' has user-provided 'seqan::Align& seqan::Align::operator=(const seqan::Align&) [with TSource = seqan::String >; TSpec = seqan::Tag]' 131 | Align & operator=(Align const & other) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:69, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, const TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1020:15: required from 'void seqan::assignValue(Holder >&, const TSource&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:1065:24: required from 'void seqan::assign(Holder >&, const Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:170:15: required from 'const seqan::Holder >& seqan::Holder >::operator=(const seqan::Holder >&) [with TValue = seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:67:8: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:142:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 142 | target = source; | ~~~~~~~^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:125: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:56: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: required from 'void seqan::operator<<(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:110:15: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:802:19: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 802 | *_cur = *src; | ~~~~~~^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:55, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:71: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index.h:98: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In instantiation of 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:347:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 347 | o1.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:357:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 357 | o0.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:361:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | o3.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:365:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 365 | o5.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:369:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 369 | o6.i1 = typename Value::Type, 1>::Type(); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:125: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:126: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 401 | /* 4 */ o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:127: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:408:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 408 | /* 2 */ o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:412:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 412 | /* 1 */ o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:424:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 424 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:426:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 426 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:428:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 428 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:430:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 430 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:435:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 435 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:437:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 437 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:441:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 441 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:454:128: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 454 | /* 0 */ cp___(o0,0,cp___(o1,1,cp___(o2,2,cp___(o3,3, *textIn)))); ++textIn; o0.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:456:129: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 456 | /* 6 */ cp___(o0,1,cp___(o1,2,cp___(o2,3,cp___(o3,4, cp___(o6,0, *textIn))))); ++textIn; o6.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:458:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 458 | /* 5 */ cp___(o0,2,cp___(o1,3,cp___(o2,4,cp___(o3,5, cp___(o5,0,cp___(o6,1, *textIn)))))); ++textIn; o5.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:460:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 460 | /* 4 */ o0.i2[0] = o1.i2[1] = o2.i2[2] = o3.i2[2] = o4.i2[0] = o5.i2[0] = o6.i2[0] = (*nameIn4).i2; ++nameIn4; o4.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:465:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 465 | /* 3 */ cp___(o0,4,cp___(o1,5, cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))))); ++textIn; o3.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:467:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 467 | /* 2 */ o0.i2[1] = o1.i2[2] = o2.i2[0] = o3.i2[0] = o4.i2[1] = o5.i2[1] = o6.i2[1] = (*nameIn2).i2; ++nameIn2; o2.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:471:130: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 471 | /* 1 */ o0.i2[2] = o1.i2[0] = o2.i2[1] = o3.i2[1] = o4.i2[2] = o5.i2[2] = o6.i2[2] = (*nameIn1).i2; ++nameIn1; o1.i1 = p; ++p; | ~~~~~~^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:653:49: required from 'int seqan::SequenceStreamImpl_::readBatch(seqan::StringSet&, seqan::StringSet&, unsigned int, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:819:37: required from 'int seqan::readBatch(StringSet&, StringSet&, SequenceStream&, unsigned int) [with TId = String >; TIdSpec = Owner<>; TSequence = String >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1225:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:262:12: required from 'int seqan::_clearAndReserveMemory(TIdString&, TSeqString&, RecordReader >&, const TTag&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TSpec = Tag; TTag = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/read_fasta_fastq.h:557:37: required from 'int seqan::readRecord(TIdString&, TSeqString&, RecordReader&, const Fasta&) [with TIdString = String >; TSeqString = String, Alloc<> >; TFile = String >; TPass = DoublePass >; Fasta = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:823:49: required from 'int seqan::SequenceStreamImpl_::readAll(seqan::StringSet&, seqan::StringSet&, const TFormatTag&) [with TId = seqan::String >; TIdSpec = seqan::Owner<>; TSequence = seqan::String, seqan::Alloc<> >; TSeqSpec = seqan::Owner<>; TFormatTag = seqan::Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream.h:940:35: required from 'int seqan::readAll(StringSet&, StringSet&, SequenceStream&) [with TId = String >; TIdSpec = Owner<>; TSequence = String, Alloc<> >; TSeqSpec = Owner<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1254:23: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairIncrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:382:10: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1032:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1032 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::pop(Pipe&, TValue&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>; TSpec = Counter; TValue = Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Skew7>, Counter>; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:386:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: required from 'seqan::Pipe >::Pipe(TInput&, const TLimitsString_&, typename seqan::EnableIf >::Type*) [with TLimitsString_ = seqan::String >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >; typename seqan::EnableIf >::Type = void]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:108:13: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:619:14: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 619 | Ref_ = *me; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:218:12: required from 'void seqan::_createSuffixArrayPipelining(TSA&, const StringSet&, TAlgSpec) [with TSA = String >, Alloc<> >; TString = String, Alloc<> >; TSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:58: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:116, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h: In instantiation of 'void seqan::posLocalize(TResult&, const Pair&, const String&) [with TResult = Pair >; TSize = long unsigned int; TSpec = Alloc<>; T1 = long unsigned int; T2 = long unsigned int; TPack = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:768:16: required from 'typename seqan::Suffix::Type seqan::suffix(const StringSet&, const TPosition&) [with TString = String, Alloc<> >; TSpec = Owner<>; TPosition = Pair >; typename Suffix::Type = Segment, Alloc<> >, SuffixSegment>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:803:25: required from 'seqan::Pair >::Type> seqan::_equalRangeSA(TText&, SearchTreeIterator, TQuery&, typename Difference::Type) [with TText = const StringSet, Alloc<> > >; TSA = const String >, Alloc<> >; TSpec = SortedList; TQuery = const String >; typename Iterator >::Type = const Pair >*; typename Difference::Type = long int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:897:23: required from 'seqan::Pair >::Type> seqan::equalRangeSAIterator(const TText&, const TSA&, const TQuery&) [with TText = StringSet, Alloc<> > >; TSA = String >, Alloc<> >; TQuery = String >; typename Iterator >::Type = const Pair >*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index_esa.h:1930:38: required from 'void seqan::_findFirstIndex(Finder, TSpecFinder>&, const TPattern&, EsaFindMlr) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >; EsaFindMlr = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_set_base.h:699:12: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 699 | result = pos; | ~~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1610:29: required from 'void seqan::arrayMoveForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1444:21: required from 'void seqan::_arrayConstructMovePointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1465:31: required from 'void seqan::arrayConstructMove(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:849:31: required from 'static typename seqan::Size::Type seqan::ClearSpaceExpandStringBase_::_clearSpace_(T&, typename seqan::Size::Type, typename seqan::Size::Type, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag; typename seqan::Size::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1014:62: required from 'typename seqan::Size >::Type seqan::_clearSpace(String&, TSize, TPosition, TPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = long unsigned int; TPosition = long unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22: required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >; TMulti = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24: required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1589:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1589 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:65: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'seqan::Pipe >, TPair, TLimitsString> >& seqan::Pipe >, TPair, TLimitsString> >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:599:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 599 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:324:41: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::pop(TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:925:24: required from 'void seqan::Pool::pop(TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1159:15: required from 'void seqan::pop(Pool&, TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:62:7: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:926:18: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 926 | Ref_ = *cur; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 5, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:414:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 5, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 4, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:415:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 4, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:432:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:443:9: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:243:12: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 6; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:404:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 4; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:422:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h: In instantiation of 'static void seqan::Pipe, seqan::Merger7Multi >::_copy(TSkewDCStream&, const seqan::Triple >, seqan::Tag >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T = seqan::SimpleType; unsigned int SIZE = 5; TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >; TSkewDCStream = seqan::SkewDCStream >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:431:11: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: required from 'seqan::Pipe, seqan::Merger7Multi >& seqan::Pipe, seqan::Merger7Multi >::operator++() [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:431:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:801:108: required from 'void seqan::assign(String&, Pipe&) [with TValue = Pair >; TStringSpec = Alloc<>; TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:826:15: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:385:19: warning: 'void* memcpy(void*, const void*, size_t)' writing to an object of non-trivially copyable type 'struct seqan::Pair >'; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 385 | memcpy(&dst.i.i1, &src.i1, sizeof(T1)); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:95:8: note: 'struct seqan::Pair >' declared here 95 | struct Pair | ^~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayMoveBackwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1641:30: required from 'void seqan::arrayMoveBackward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1213:26: required from 'void seqan::arrayMove(TSource1, TSource2, TTarget) [with TTarget = SimpleType*; TSource1 = SimpleType*; TSource2 = SimpleType*]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1660:14: required from 'void seqan::_arrayClearSpacePointer(TValue*, size_t, size_t, size_t, const True&) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1681:28: required from 'void seqan::arrayClearSpace(TValue*, size_t, size_t, size_t) [with TValue = SimpleType; size_t = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:856:28: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1048:30: required from 'typename seqan::Size >::Type seqan::resizeSpace(String&, TSize, TBeginPosition, TEndPosition, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize = int; TBeginPosition = int; TEndPosition = unsigned int; TExpand = TagGenerous_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2212:23: required from 'TSize seqan::resizeSpace(T&, TSize, TBeginPosition, TEndPosition) [with T = String >; TSize = int; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2267:16: required from 'void seqan::erase(T&, TBeginPosition, TEndPosition) [with T = String >; TBeginPosition = int; TEndPosition = unsigned int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/general_processing.h:716:22: required from 'void preTrim(TSeqs&, TIds&, TMulti&, unsigned int, unsigned int, unsigned int, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >; TMulti = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1607:24: required from 'void preprocessingStage(TSeqs&, TIds&, DemultiplexingParams&, ProcessingParams&, const seqan::ArgumentParser&, GeneralStats&) [with TSeqs = seqan::StringSet > >; TIds = seqan::StringSet > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2655:35: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1621:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1621 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h: In instantiation of 'void seqan::assign(TTarget&, TSource&) [with TTarget = Index, Alloc<> > >, IndexEsa<> >; TSource = Index, Alloc<> > >, IndexEsa<> >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:730:15: required from 'void seqan::create(Holder >&, TValue2&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; TValue2 = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:674:19: required from 'void seqan::create(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/holder_tristate.h:990:15: required from 'typename seqan::Reference > >::Type seqan::value(Holder >&) [with TValue = Index, Alloc<> > >, IndexEsa<> >; typename Reference > >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:118:15: required from 'typename seqan::Parameter_ >::Type seqan::container(Finder, TSpecFinder>&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; typename Parameter_ >::Type = Index, Alloc<> > >, IndexEsa<> >&]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/find/find_base.h:1165:18: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/find_index.h:292:19: required from 'bool seqan::find(Finder, TSpecFinder>&, const TPattern&) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecFinder = const Tag; TPattern = String >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:274:10: required from 'int findExactIndex(const TPrefix&, TFinder&) [with TPrefix = seqan::String >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:326:33: required from 'void findAllExactIndex(seqan::String&, const TPrefices&, const TFinder&, TStats&) [with TPrefices = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TStats = DemultiplexStats]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/demultiplex.h:458:19: required from 'void doAll(seqan::StringSet >&, TMultiplex&, TBarcodes&, TFinder&, DemultiplexStats&, bool) [with TBarcodes = seqan::StringSet, seqan::Alloc<> > >; TMultiplex = seqan::StringSet > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:1733:14: required from 'int demultiplexingStage(DemultiplexingParams&, TSeqsVec&, TIdsVec&, TFinder&, TMap&, GeneralStats&) [with TSeqsVec = seqan::String > > >; TIdsVec = seqan::String > > >; TFinder = seqan::Finder, seqan::Alloc<> > >, seqan::IndexEsa<> > >; TMap = seqan::String]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2659:40: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/fundamental_transport.h:133:12: warning: implicitly-declared 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >& seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >::operator=(const seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >&)' is deprecated [-Wdeprecated-copy] 133 | target = source; | ~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_esa_base.h:548:17: note: because 'seqan::Index, seqan::Alloc<> > >, seqan::IndexEsa<> >' has user-provided 'seqan::Index >::Index(const seqan::Index >&) [with TText = seqan::StringSet, seqan::Alloc<> > >; TSpec = void]' 548 | Index(Index const &other): | ^~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'const typename seqan::Value > >::Type& seqan::Pipe >::operator*() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>; typename seqan::Value > >::Type = seqan::Pair >, long unsigned int, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:148:22: required from 'const typename seqan::Value > >::Type seqan::Pipe >::operator*() const [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >; typename seqan::Value > >::Type = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:24: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:134:20: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 134 | tmp.i1 = getValueI1(*in); | ~~~~~~~^~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_separator7.h:64:9: required from 'void seqan::_skew7SeparateSlices(TInput&, const TFunctor&, TOut1&, TOut2&, TOut4&) [with TInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TFunctor = _skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > >; TOut1 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut2 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut4 = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:342:25: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TConfig = seqan::MapperConfigSize >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TSpec = MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:416:21: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: required from 'bool seqan::Pipe >::process(TInput_&) [with TInput_ = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; TPair_ = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:294:11: [ skipping 2 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:317:20: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:651:23: required from 'bool seqan::control(Pipe&, const TCommand&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >; TCommand = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >; TSpec = Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:328:26: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >& seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple, 7, seqan::BitPacked<> >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:165:23: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 165 | me.tmp.i1 = me.last.i1; | ~~~~~~~~~~^~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:401:106: required from 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:350:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:341:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:352:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:161:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:162:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:179:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:190:17: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:173:12: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7_multi.h:367:34: [ skipping 3 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::setHost(PairDecrementer_&, const TLimits2&) [with TPair = Pair >; TLimits = String >; unsigned int m = 7; TLimits2 = String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:537:11: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:1119:16: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 1119 | me.pos = TPair(0, 0); | ~~~~~~~^~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h: In instantiation of 'void seqan::Pipe >, TPair, TLimitsString> >::fill() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:544:13: required from 'void seqan::Pipe >, TPair, TLimitsString> >::prepare() [with TInput = seqan::Pipe, seqan::Alloc<> > > >, seqan::Source<> >, seqan::Caster, seqan::CasterReinterpret> >; unsigned int m = 7; TPair = seqan::Pair >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:613:19: required from 'bool seqan::control(Pipe, TPair, TLimitsString> >&, const ControlBeginRead&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; unsigned int m = 7; TPack = BitPacked<>; TPair = Pair >; TLimitsString = String >; ControlBeginRead = Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TSpec = Multi >, Pair >, String > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tuple, 7, BitPacked<> >, Tag >; TSpec = SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >, Multi >, Pair >, String > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_sampler.h:557:32: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 557 | tmp.i1 = localPos; | ~~~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew7NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew7NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h: In instantiation of 'TResult seqan::_skew7NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:345:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple >, Tag >; TSpec = MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:163:29: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:312:11: [ skipping 4 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<7, Tag > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:335:20: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:148:104: required from 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:362:29: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:247:41: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:143:22: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 143 | last = *in; | ~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::end() [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:684:24: required from 'void seqan::Handler, seqan::Tag >::end() [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:953:16: required from 'bool seqan::Pool::endWrite() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:837:13: required from 'seqan::Pool::~Pool() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:259:45: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:584:58: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 584 | *cb->cur = pool.undefinedValue; | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:123:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: required from 'seqan::Pipe::Pipe(TInput&) [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:376:34: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_aggregate.h:59: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:124:27: required from 'bool seqan::CompareSkewDCStream::operator()(const seqan::SkewDCStream&, const seqan::SkewDCStream&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:307:23: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: required from 'seqan::Pipe, seqan::Merger7>& seqan::Pipe, seqan::Merger7>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:440:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_counter.h:105:13: required from 'seqan::Pipe& seqan::Pipe::operator++() [with TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >, seqan::Skew7>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:620:9: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple >, Tuple, Tuple, 6, BitPacked<> >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:446:6: required from 'void seqan::Pipe, seqan::Merger7Multi >::insertStream(unsigned int) [with TInput0 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, seqan::MapperSpec >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >; TLimitsString = seqan::String >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:464:4: [ skipping 5 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >& seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >::operator=(const seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple >, seqan::Tuple, seqan::Tuple, 6, seqan::BitPacked<> >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = seqan::Pair >; T2 = seqan::Tuple; T3 = seqan::Tuple, 6, seqan::BitPacked<> >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h: In instantiation of 'bool seqan::control(Pipe >&, const ControlBeginRead&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TCompare = _skew3NComp >, Tag >, int>; ControlBeginRead = Tag]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:712:23: required from 'bool seqan::beginRead(Pipe&) [with TInput = Pool >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >; TSpec = Namer<_skew3NComp >, Tag >, int> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1354:23: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:164:21: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 164 | me.last = *me.in; | ~~~~~~~~^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h: In instantiation of 'TResult seqan::_skew3NComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Pair >, seqan::Tag >; TResult = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:141:30: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:251:26: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:74:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 74 | const TStoredValue *sa = a.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:75:43: warning: taking address of packed member of 'seqan::Tuple >' may result in an unaligned pointer value [-Waddress-of-packed-member] 75 | const TStoredValue *sb = b.i2.i; | ~~~~~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TConfig = seqan::MapperConfigSize, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Triple, seqan::Tuple, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Triple, Tuple, Tag >; TSpec = MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:101:17: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: required from 'bool seqan::Pipe::process(TInput_&) [with TInput_ = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >; TInput = seqan::Pipe >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Filter >, long unsigned int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:218:11: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew7NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13: required from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >; TFunctor = seqan::filterI2 >, long unsigned int>]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_sa_lss.h:415:29: [ skipping 6 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >; TValue = seqan::Pair >, seqan::Tag >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: required from 'bool seqan::operator<<(Pool&, TSource&) [with TValue = Pair >, Tag >; TSpec = SorterSpec >, Tag >, int>, long unsigned int, File > > >; TSource = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >, Sampler<3> >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:241:20: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:937:18: warning: implicitly-declared 'constexpr seqan::Pair >, seqan::Tag >& seqan::Pair >, seqan::Tag >::operator=(const seqan::Pair >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 937 | *cur = Val_; | ~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >, seqan::Tag >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = seqan::Tuple >]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapLinear >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender3.h:86:38: required from 'bool seqan::_skew3Extend(TTextInput&, TNameInput&, TOut0&, TOut12&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple, Tag >, SorterSpec, Tuple, Tag >, int>, long unsigned int, File > > > >; TOut12 = Pool, Tuple, Tag >, MapperSpec, Tuple, Tag >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:269:29: [ skipping 7 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler::push(const TValue&) [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TValue = seqan::Pair >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:673:41: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:361:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 361 | buffer[pool.handlerArgs(Val_)] = Val_; | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'void seqan::Handler >, seqan::MapperAsyncWriter>::push(const TValue&) [with TValue = seqan::Pair >; TConfig = seqan::MapperConfigSize >, long unsigned int>, long unsigned int, seqan::File > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:674:25: required from 'void seqan::Handler, seqan::Tag >::push(const TValue&) [with THandler1 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::MapperMemAdapter>; THandler2 = seqan::Handler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::MapperAsyncWriter>; TValue = seqan::Pair >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:930:25: required from 'void seqan::Pool::push(const TValue&) [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1191:16: required from 'void seqan::push(Pool&, const TValue&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1356:17: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: required from 'bool seqan::assign(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1395:22: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:567:33: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 567 | *cb.cur = item; | ~~~~~~~~^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple >, Tag >; TConfig = MapperConfigSize<_skew7NMapExtended, Tuple >, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple >, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:301:6: required from 'void seqan::Pipe, seqan::Merger7>::insertStream(unsigned int) [with TInput0 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 3, int>, long unsigned int, seqan::File > > > >; TInput3 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput5 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >; TInput6 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >; TInput124 = seqan::Pool, seqan::Tuple >, seqan::Tag >, seqan::MapperSpec, seqan::Tuple >, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger7.h:319:4: [ skipping 8 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple >, seqan::Tag >& seqan::Triple, seqan::Tuple >, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple >, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple >, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple >]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Pair >; TConfig = MapperConfigSize<_skew3NMapSliced >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler >, seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >; TSpec = seqan::MapperSpec >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: required from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1388:42: [ skipping 9 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Pair >& seqan::Pair >::operator=(const seqan::Pair >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/pair_packed.h:110:23: note: because 'seqan::Pair >' has user-provided 'seqan::Pair >::Pair(const seqan::Pair >&) [with T1 = long unsigned int; T2 = long unsigned int]' 110 | SEQAN_HOST_DEVICE Pair(Pair const &_p) : i1(_p.i1), i2(_p.i2) {} | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h: In instantiation of 'seqan::Buffer& seqan::processBuffer(Buffer >&, BufferHandler >, Tag >&) [with TValue = Triple, Tuple, Tag >; TConfig = MapperConfigSize<_skew3NMapExtended, Tuple, Tag >, long unsigned int>, long unsigned int, File > >; typename TConfig::File = File >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:387:33: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer& seqan::BufferHandler, seqan::Tag >::next() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:607:32: required from 'seqan::BufferHandler, seqan::Tag >::TBuffer seqan::BufferHandler, seqan::Tag >::next() [with TBufferHandler1 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBufferHandler2 = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >; TBuffer = seqan::Buffer, seqan::Tuple, seqan::Tag >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_base.h:919:38: required from 'void seqan::Handler::pop() [with TBufferHandler = seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::BufferHandler, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >, seqan::Tag > >, seqan::Tag >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15: required from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:111:17: required from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew3.h:329:13: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:252:50: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 252 | *refNext = *I; | ~~~~~~~~~^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:253:44: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 253 | *I = *refPrev; | ~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_mapper.h:293:46: warning: implicitly-declared 'constexpr seqan::Triple, seqan::Tuple, seqan::Tag >& seqan::Triple, seqan::Tuple, seqan::Tag >::operator=(const seqan::Triple, seqan::Tuple, seqan::Tag >&)' is deprecated [-Wdeprecated-copy] 293 | *cur = *refPrev; | ~~~~~^~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/triple_packed.h:103:12: note: because 'seqan::Triple, seqan::Tuple, seqan::Tag >' has user-provided 'seqan::Triple >::Triple(const seqan::Triple >&) [with T1 = long unsigned int; T2 = seqan::Tuple; T3 = seqan::Tuple]' 103 | inline Triple(Triple const &_p) | ^~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 6; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 3; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 3, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 3, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 3, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] 171 | return i[k]; | ~^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 4; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 1; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 1, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 1, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 1, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h: In instantiation of 'const typename seqan::StoredTupleValue_::Type& seqan::Tuple >::operator[](TPos) const [with TPos = unsigned int; TValue = long unsigned int; unsigned int SIZE = 5; typename seqan::StoredTupleValue_::Type = long unsigned int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_skew7.h:191:25: required from 'TResult seqan::_skew7ExtendComp::operator()(const TValue&, const TValue&) const [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; unsigned int EXT_LENGTH = 2; TResult = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:68:21: required from 'bool seqan::AdaptorCompare2Less::operator()(const typename TCompare::first_argument_type&, const typename TCompare::second_argument_type&) const [with TCompare = seqan::_skew7ExtendComp, seqan::Tuple >, seqan::Tag >, 2, int>; typename TCompare::first_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >; typename TCompare::second_argument_type = seqan::Triple, seqan::Tuple >, seqan::Tag >]' /usr/include/c++/13/bits/predefined_ops.h:158:30: required from 'constexpr bool __gnu_cxx::__ops::_Iter_comp_iter<_Compare>::operator()(_Iterator1, _Iterator2) [with _Iterator1 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Iterator2 = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = seqan::AdaptorCompare2Less, seqan::Tuple >, seqan::Tag >, 2, int> >]' /usr/include/c++/13/bits/stl_algo.h:1819:14: required from 'void std::__insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1859:25: required from 'void std::__final_insertion_sort(_RandomAccessIterator, _RandomAccessIterator, _Compare) [with _RandomAccessIterator = seqan::Triple, seqan::Tuple >, seqan::Tag >*; _Compare = __gnu_cxx::__ops::_Iter_comp_iter, seqan::Tuple >, seqan::Tag >, 2, int> > >]' /usr/include/c++/13/bits/stl_algo.h:1950:31: [ skipping 11 instantiation contexts, use -ftemplate-backtrace-limit=0 to disable ] /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:194:37: required from 'void seqan::_createSuffixArrayWrapper(TSA&, const StringSet&, const TAlgSpec&, True) [with TSA = String >, Alloc<> >; TSequence = String, Alloc<> >; TSetSpec = Owner<>; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:221:34: required from 'void seqan::createSuffixArray(TSA&, const TText&, const TAlgSpec&) [with TSA = String >, Alloc<> >; TText = StringSet, Alloc<> > >; TAlgSpec = Skew7]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:685:20: required from 'bool seqan::indexCreate(Index&, FibreSA, TSpecAlg) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TSpecAlg = Skew7; FibreSA = const Tag]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:726:27: required from 'bool seqan::indexCreate(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/index_shims.h:835:21: required from 'bool seqan::indexRequire(Index&, Tag) [with TText = StringSet, Alloc<> > >; TSpec = IndexEsa<>; TFibre = FibreSA_]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexlib.cpp:2358:25: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/tuple_base.h:171:17: warning: returning reference to temporary [-Wreturn-local-addr] In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io.h:64: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h: In member function 'void seqan::SequenceStreamImpl_::_guessFileTypeAndFormatForReadingAndInitialize()': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:310:25: warning: this statement may fall through [-Wimplicit-fallthrough=] 310 | _fileFormat = this->_checkFormat(*_istreamReader); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/seq_io/sequence_stream_impl.h:313:9: note: here 313 | case SeqIOFileType_::FILE_TYPE_AUTO: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7Extend(TTextInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >, Filter >, long unsigned int> > >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool, Tuple >, Tag >, SorterSpec, Tuple >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool, Tuple >, Tag >, MapperSpec, Tuple >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:142:117: warning: this statement may fall through [-Wimplicit-fallthrough=] 142 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:144:9: note: here 144 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:145:118: warning: this statement may fall through [-Wimplicit-fallthrough=] 145 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:147:9: note: here 147 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:149:103: warning: this statement may fall through [-Wimplicit-fallthrough=] 149 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:151:9: note: here 151 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:152:119: warning: this statement may fall through [-Wimplicit-fallthrough=] 152 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p--; | ~~~~~~^~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:154:9: note: here 154 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:156:105: warning: this statement may fall through [-Wimplicit-fallthrough=] 156 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:158:9: note: here 158 | case 1: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h: In function 'bool seqan::_skew7ExtendMulti(TTextInput&, const TLimitsString&, TNameInput&, TNameInput&, TNameInput&, TOut0&, TOut3&, TOut5&, TOut6&, TOut124&) [with TTextInput = Pipe, Alloc<> > > >, Source<> >, Caster, CasterReinterpret> >; TLimitsString = String >; TNameInput = Pool >, MapperSpec >, long unsigned int>, long unsigned int, File > > > >; TOut0 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 3, int>, long unsigned int, File > > > >; TOut3 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut5 = Pool >, Tuple, Tuple, 4, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int>, long unsigned int, File > > > >; TOut6 = Pool >, Tuple, Tuple, 5, BitPacked<> >, Tag >, SorterSpec >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int>, long unsigned int, File > > > >; TOut124 = Pool >, Tuple, Tuple, 6, BitPacked<> >, Tag >, MapperSpec >, Tuple, Tuple, 6, BitPacked<> >, Tag >, long unsigned int>, long unsigned int, File > > > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:395:130: warning: this statement may fall through [-Wimplicit-fallthrough=] 395 | /* 6 */ cp___(o6,0, *textIn); ++textIn; o6.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:397:25: note: here 397 | case 5: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:398:131: warning: this statement may fall through [-Wimplicit-fallthrough=] 398 | /* 5 */ cp___(o5,0,cp___(o6,1, *textIn)); ++textIn; o5.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:400:25: note: here 400 | case 4: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:402:162: warning: this statement may fall through [-Wimplicit-fallthrough=] 402 | cp___(o4,0,cp___(o5,1,cp___(o6,2, *textIn))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:404:25: note: here 404 | case 3: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:405:132: warning: this statement may fall through [-Wimplicit-fallthrough=] 405 | /* 3 */ cp___(o3,0,cp___(o4,1,cp___(o5,2,cp___(o6,3, *textIn)))); ++textIn; o3.i1 = p; ++p; | ^~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:407:25: note: here 407 | case 2: | ^~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:409:138: warning: this statement may fall through [-Wimplicit-fallthrough=] 409 | cp___(o2,0,cp___(o3,1,cp___(o4,2,cp___(o5,3,cp___(o6,4, *textIn))))); ++textIn; | ^~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pump_extender7.h:411:25: note: here 411 | case 1: | ^~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io.h:59, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/store.h:41: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h: In function 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:36: warning: '__builtin___snprintf_chk' output may be truncated before the last format character [-Wformat-truncation=] 399 | snprintf(buffer, 4, "%d", x); | ^ In file included from /usr/include/stdio.h:906, from /usr/include/c++/13/cstdio:42, from /usr/include/c++/13/ext/string_conversions.h:45, from /usr/include/c++/13/bits/basic_string.h:4072, from /usr/include/c++/13/string:54: In function 'int snprintf(char*, size_t, const char*, ...)', inlined from 'void seqan::_assignTagsBamToSamOneTag(TTarget&, TSourceIter&) [with TTarget = String >; TSourceIter = Iter >, AdaptorIterator > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/bam_io/bam_sam_conversion.h:399:21: /usr/include/bits/stdio2.h:54:35: note: '__builtin___snprintf_chk' output between 2 and 5 bytes into a destination of size 4 54 | return __builtin___snprintf_chk (__s, __n, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 55 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 56 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 4, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 4, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 4, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 4, BitPacked<> >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 4, seqan::BitPacked<> >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, Tuple, 5, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, Tuple, 5, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, Tuple, 5, BitPacked<> >, Tag >, _skew7ExtendComp >, Tuple, Tuple, 5, BitPacked<> >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, seqan::Tuple, 5, seqan::BitPacked<> >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 1, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 1, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple >, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple >, Tag > >; TLess = MergeStreamComparer, Tuple >, Tag >, _skew7ExtendComp, Tuple >, Tag >, 2, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple >, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In member function 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple >, seqan::Tag >, seqan::SorterSpec, seqan::Tuple >, seqan::Tag >, 2, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tuple, 7, BitPacked<> >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tuple, 7, BitPacked<> >, Tag > >; TLess = MergeStreamComparer >, Tuple, 7, BitPacked<> >, Tag >, _skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NCompMulti >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pipe >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, seqan::SorterSpec >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Namer >, seqan::Tuple, 7, seqan::BitPacked<> >, seqan::Tag >, int> > >; TFunctor = seqan::_skew7GlobalSlicedMulti >, long unsigned int, seqan::Tag >, seqan::String >, long unsigned int, seqan::Pair > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_filter.h:153:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tuple, 7, BitPacked<> >, Tag >, SorterSpec >, Tuple, 7, BitPacked<> >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NCompMulti >, Tuple, 7, BitPacked<> >, Tag >, int> > >, Filter<_skew7GlobalSlicedMulti >, long unsigned int, Tag >, String >, long unsigned int, Pair > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Tuple, Tag > >, Alloc<> >; TValue = PageBucketExtended, Tuple, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Tuple, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended, Tuple, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended, Tuple, Tag > >; TLess = MergeStreamComparer, Tuple, Tag >, _skew3ExtendComp, Tuple, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TPoolSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Triple, seqan::Tuple, seqan::Tag >; TSpec = seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/index/pipe_merger3.h:127:17: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'seqan::Pipe, seqan::Merger3>& seqan::Pipe, seqan::Merger3>::operator++() [with TInput0 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::SorterSpec, seqan::Tuple, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TInput12 = seqan::Pool, seqan::Tuple, seqan::Tag >, seqan::MapperSpec, seqan::Tuple, seqan::Tag >, long unsigned int>, long unsigned int, seqan::File > > > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew7NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew7NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew7NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >, Tag > >, Alloc<> >; TValue = PageBucketExtended >, Tag > >; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >, seqan::Tag > >, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = PageBucketExtended >, Tag > >; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'void seqan::pop(PriorityType&) [with TValue = PageBucketExtended >, Tag > >; TLess = MergeStreamComparer >, Tag >, _skew3NComp >, Tag >, int> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/priority_type_heap.h:333:8, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with TValue = seqan::Pair >, seqan::Tag >; TPoolSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_sorter.h:311:18, inlined from 'void seqan::Handler, seqan::Tag >::pop() [with THandler1 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >, seqan::AdapterSpec>; THandler2 = seqan::Handler >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >, seqan::Tag >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:664:24, inlined from 'seqan::Pool& seqan::Pool::operator++() [with TValue = seqan::Pair >, seqan::Tag >; TSpec = seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:919:15, inlined from 'seqan::Pipe >& seqan::Pipe >::operator++() [with TInput = seqan::Pool >, seqan::Tag >, seqan::SorterSpec >, seqan::Tag >, int>, long unsigned int, seqan::File > > > >; TCompare = seqan::_skew3NComp >, seqan::Tag >, int>]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pipe_namer.h:140:13, inlined from 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/pipe/pool_base.h:1357:13: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551536' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'bool seqan::append(Pool&, TSource&) [with TValue = Pair >; TSpec = MapperSpec >, long unsigned int>, long unsigned int, File > > >; TSource = Pipe >, Tag >, SorterSpec >, Tag >, int>, long unsigned int, File > > > >, Namer<_skew3NComp >, Tag >, int> > >]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 88%] Linking CXX static library libseqan_flexlib.a cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -P CMakeFiles/seqan_flexlib.dir/cmake_clean_target.cmake cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexlib.dir/link.txt --verbose=1 /usr/bin/ar qc libseqan_flexlib.a CMakeFiles/seqan_flexlib.dir/seqan_flexlib.cpp.o /usr/bin/ranlib libseqan_flexlib.a make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Built target seqan_flexlib make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=QUALITY_CONTROL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 90%] Linking CXX executable ../../../bin/sflexQC cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexQC.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexQC.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexQC libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 90%] Built target sflexQC make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=ADAPTER_REMOVAL -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 91%] Linking CXX executable ../../../bin/sflexAR cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexAR.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexAR.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexAR libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Built target sflexAR make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=DEMULTIPLEXING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 93%] Linking CXX executable ../../../bin/sflexDMulti cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexDMulti.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexDMulti.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexDMulti libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Built target sflexDMulti make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DFLEX_PROG=FILTERING -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -MF CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 95%] Linking CXX executable ../../../bin/sflexFilter cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/sflexFilter.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sflexFilter.dir/seqan_flexbar.cpp.o -o ../../../bin/sflexFilter libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Built target sflexFilter make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Building CXX object extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/g++ -DSEQAN_DATE=\"\" -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_BZIP2=1 -DSEQAN_HAS_EXECINFO=1 -DSEQAN_HAS_OPENMP=1 -DSEQAN_HAS_ZLIB=1 -DSEQAN_REVISION=\"\" -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -MF CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o.d -o CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar/seqan_flexbar.cpp [ 96%] Linking CXX executable ../../../bin/seqan_flexbar cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar && /usr/bin/cmake -E cmake_link_script CMakeFiles/seqan_flexbar.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -fopenmp -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/seqan_flexbar.dir/seqan_flexbar.cpp.o -o ../../../bin/seqan_flexbar libseqan_flexlib.a -lrt -L/usr/lib64 -lz -L/usr/lib64 -lbz2 make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Built target seqan_flexbar make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Building CXX object extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/sgip/CMakeFiles/sgip.dir/sgip.cpp.o -MF CMakeFiles/sgip.dir/sgip.cpp.o.d -o CMakeFiles/sgip.dir/sgip.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream.h:86, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types.h:43, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/debug_test_system.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_debug.h:52, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:49, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:27: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip_base.h:33, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip/sgip.cpp:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:759:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Directed<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:760:23: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor) [with TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:617:19, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:764:10: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Directed<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Undirected<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:759:37: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:394:33, inlined from 'void seqan::_createVertices(Graph&, TVertexDescriptor) [with TSpec = Undirected<>; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:709:65, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:760:23: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::EdgeDescriptor > >::Type seqan::addEdge(Graph >&, TVertexDescriptor, TVertexDescriptor) [with TCargo = void; TSpec = Tag; TVertexDescriptor = unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_undirected.h:441:19, inlined from 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_interface.h:764:10: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'void seqan::addEdges(Graph&, const TEdgeArray&, TSize) [with TSpec = Undirected<>; TEdgeArray = std::vector; TSize = long unsigned int]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [ 98%] Linking CXX executable ../../../bin/sgip cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip && /usr/bin/cmake -E cmake_link_script CMakeFiles/sgip.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -std=c++11 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/sgip.dir/sgip.cpp.o -o ../../../bin/sgip -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Built target sgip make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Building CXX object extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/g++ -DSEQAN_ENABLE_TESTING=0 -DSEQAN_HAS_EXECINFO=1 -D_FILE_OFFSET_BITS=64 -D_LARGEFILE_SOURCE -I/builddir/build/BUILD/seqan-1.4.2/extras/include -I/builddir/build/BUILD/seqan-1.4.2/core/include -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -MD -MT extras/apps/variant_comp/CMakeFiles/variant_comp.dir/variant_comp.cpp.o -MF CMakeFiles/variant_comp.dir/variant_comp.cpp.o.d -o CMakeFiles/variant_comp.dir/variant_comp.cpp.o -c /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier.h:68, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:48, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:80:36: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 80 | struct FunctorUpcase : public std::unary_function | ^~~~~~~~~~~~~~ In file included from /usr/include/c++/13/string:49, from /usr/include/c++/13/bits/locale_classes.h:40, from /usr/include/c++/13/bits/ios_base.h:41, from /usr/include/c++/13/ios:44, from /usr/include/c++/13/ostream:40, from /usr/include/c++/13/iostream:41, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:22: /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:115:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 115 | struct FunctorLowcase : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:151:37: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 151 | struct FunctorConvert : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:220:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 220 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:229:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 229 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:239:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 239 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:249:45: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 249 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:259:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 259 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:268:46: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 268 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/modifier/modifier_functors.h:280:47: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 280 | struct FunctorComplement : public std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/stream_algorithms.h:40, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:91: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamPeek(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:169:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 169 | if (c == EOF) | ^ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h: In function 'int seqan::streamReadChar(char&, FILE*)': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/stream/adapt_cstdio.h:182:11: warning: comparison is always false due to limited range of data type [-Wtype-limits] 182 | if (c == EOF) | ^ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file.h:117: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h: At global scope: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/file/string_external.h:1436:51: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 1436 | struct testIODone : public ::std::unary_function | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:46, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:47, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm_heap_tree.h:342:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 342 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms.h:47: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_algorithms/graph_algorithm.h:793:23: warning: 'template struct std::unary_function' is deprecated [-Wdeprecated-declarations] 793 | public ::std::unary_function, bool> | ^~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:117:12: note: declared here 117 | struct unary_function | ^~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:35: /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:238:37: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 238 | struct LessGPosSize : public ::std::binary_function < TIndel, TIndel, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:256:33: warning: 'template struct std::binary_function' is deprecated [-Wdeprecated-declarations] 256 | struct LessGPos : public ::std::binary_function < TVariant, TVariant, bool > | ^~~~~~~~~~~~~~~ /usr/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'bool seqan::compareIndelPair(TIndel&, TIndel&, TOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:278:5: warning: this 'if' clause does not guard... [-Wmisleading-indentation] 278 | if(options.genotypeAware && predIndel.genotype != refIndel.genotype) | ^~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:281:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'if' 281 | int sizeTol = int((double)abs(refIndel.indelSize) * options.sizeTolerance); | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h: In function 'int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&)': /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:477:5: warning: this 'for' clause does not guard... [-Wmisleading-indentation] 477 | for(TIndelIt it = begin(refIndels); it != end(refIndels); ++it) | ^~~ /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:479:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the 'for' 479 | for(TIndelIt it = begin(predIndels); it != end(predIndels); ++it) | ^~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_align.h:55: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h: In instantiation of 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TVertexDescriptor&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TVertexDescriptor = unsigned int; TValue = int; TCargo = int]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1917:15: required from 'void seqan::findIntervals(const Graph&, const TPropertyMap&, TValue, TValue, String&) [with TSpec = Directed >; TPropertyMap = String, StorePointsOnly>, Alloc<> >; TValue = int; TCargo = int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1898:15: required from 'void seqan::findIntervals(const IntervalTree&, TValue, TValue, String&) [with TValue = int; TCargo = int]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.h:582:17: required from 'int seqan::compareIndels(TIndelSet&, TIndelSet&, TGenome&, TGenomeIDs&, TOptions&) [with TIndelSet = StringSet; TGenome = StringSet, Alloc<> > >; TGenomeIDs = String > >; TOptions = IndelCompareOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:834:31: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1949:26: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1949 | act_prop = property(pm,act_knot); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1961:43: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1961 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:1982:51: warning: implicitly-declared 'seqan::IntervalTreeNode, seqan::StorePointsOnly>& seqan::IntervalTreeNode, seqan::StorePointsOnly>::operator=(const seqan::IntervalTreeNode, seqan::StorePointsOnly>&)' is deprecated [-Wdeprecated-copy] 1982 | next_prop = property(pm,targetVertex(it)); | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/misc/misc_interval_tree.h:398:9: note: because 'seqan::IntervalTreeNode, seqan::StorePointsOnly>' has user-provided 'seqan::IntervalTreeNode::IntervalTreeNode(const seqan::IntervalTreeNode&) [with TInterval = seqan::IntervalAndCargo]' 398 | IntervalTreeNode(IntervalTreeNode const & other): | ^~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_fundamental.h:79, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:58, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence.h:51, from /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:29: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h: In instantiation of 'void seqan::_arrayCopyForwardPointer(TValue*, TValue*, TValue*, True) [with TValue = SimpleType]': /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1542:29: required from 'void seqan::arrayCopyForward(TValue*, TValue*, TValue*) [with TValue = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1398:21: required from 'void seqan::_arrayConstructCopyPointer(TValueSource*, TValueSource*, TValueTarget*, True) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1429:31: required from 'void seqan::arrayConstructCopy(TValueSource*, TValueSource*, TValueTarget*) [with TValueSource = SimpleType; TValueTarget = SimpleType]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1840:27: required from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20: required from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = SimpleType; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagExact_; typename Size >::Type = long unsigned int]' /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:131:16: required from 'seqan::String >::String(const seqan::String >&) [with TValue = seqan::SimpleType; TSpec = void]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:444:39: required from 'int readGFF(const char*, TIndelSet&, TSnpSet&, TGenomeMap&, TOptions&) [with TIndelSet = seqan::StringSet; TSnpSet = seqan::StringSet; TGenomeMap = std::map >, unsigned int>; TOptions = seqan::IndelCompareOptions<>]' /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp/variant_comp.cpp:815:16: required from here /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/array_construct_destruct.h:1521:19: warning: 'void* memmove(void*, const void*, size_t)' writing to an object of type 'class seqan::SimpleType' with no trivial copy-assignment; use copy-assignment or copy-initialization instead [-Wclass-memaccess] 1521 | ::std::memmove(target_begin, source_begin, (source_end - source_begin) * sizeof(TValue)); | ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_alphabet.h:84, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:68: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/alphabet_simple_type.h:116:7: note: 'class seqan::SimpleType' declared here 116 | class SimpleType | ^~~~~~~~~~ In file included from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/basic_allocator.h:53, from /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic.h:74: In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String, Alloc<> >; TValue = std::__cxx11::basic_string; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String, seqan::Alloc<> >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = std::__cxx11::basic_string; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Size::Type seqan::resize(T&, TSize) [with T = String, Alloc<> >; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2143:18, inlined from 'void seqan::eraseBack(T&) [with T = String, Alloc<> >]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/sequence_interface.h:2337:8, inlined from 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/arg_parse/arg_parse_ctd_support.h:88:30: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551552' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/include/c++/13/bits/exception_ptr.h:38, from /usr/include/c++/13/exception:164, from /usr/include/c++/13/ios:41: /usr/include/c++/13/new: In function 'TSequence seqan::_toText(const TSequence&) [with TSequence = std::__cxx11::basic_string]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ In function 'void seqan::allocate(T&, TValue*&, TSize, const Tag&) [with T = String >; TValue = unsigned int; TSize = long unsigned int; TUsage = AllocateStorage_]', inlined from 'typename seqan::Value > >::Type* seqan::_allocateStorage(String >&, TSize) [with TValue = unsigned int; TSpec = void; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_alloc.h:385:13, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1685:28, inlined from 'typename seqan::Value >::Type* seqan::_reallocateStorage(String&, TSize, Generous) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1730:30, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1835:83, inlined from 'void seqan::_reserveStorage(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1821:1, inlined from 'typename seqan::Size >::Type seqan::reserve(String&, TSize_, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize_ = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1855:20, inlined from 'static typename seqan::Size::Type seqan::_Resize_String::resize_(T&, typename seqan::Size::Type) [with T = seqan::String >; TExpand = seqan::Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1887:45, inlined from 'typename seqan::Size >::Type seqan::resize(String&, TSize, Tag) [with TValue = unsigned int; TSpec = Alloc<>; TSize = long unsigned int; TExpand = TagGenerous_]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/sequence/string_base.h:1952:50, inlined from 'typename seqan::Value >::Type seqan::obtainId(IdManager&) [with TIdType = unsigned int; TSpec = Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_idmanager.h:205:9, inlined from 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]' at /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/graph_types/graph_impl_directed.h:534:33: /builddir/build/BUILD/seqan-1.4.2/core/include/seqan/basic/allocator_interface.h:297:35: warning: argument 1 value '18446744073709551608' exceeds maximum object size 9223372036854775807 [-Walloc-size-larger-than=] 297 | */ data = (TValue *) operator new(count * sizeof(TValue)); | ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~ /usr/include/c++/13/new: In function 'typename seqan::VertexDescriptor > >::Type seqan::addVertex(Graph >&) [with TCargo = void; TSpec = const Tag]': /usr/include/c++/13/new:126:26: note: in a call to allocation function 'void* operator new(std::size_t)' declared here 126 | _GLIBCXX_NODISCARD void* operator new(std::size_t) _GLIBCXX_THROW (std::bad_alloc) | ^~~~~~~~ [100%] Linking CXX executable ../../../bin/variant_comp cd /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp && /usr/bin/cmake -E cmake_link_script CMakeFiles/variant_comp.dir/link.txt --verbose=1 /usr/bin/g++ -std=c++14 -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -lemon -W -Wall -Wno-long-long -fstrict-aliasing -Wstrict-aliasing -Wno-long-long -O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -fPIC -DSEQAN_ENABLE_DEBUG=0 -static-libgcc -static-libstdc++ -rdynamic CMakeFiles/variant_comp.dir/variant_comp.cpp.o -o ../../../bin/variant_comp -lrt make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target variant_comp make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 + RPM_EC=0 ++ jobs -p + exit 0 Executing(%install): /bin/sh -e /var/tmp/rpm-tmp.k0EXNH + umask 022 + cd /builddir/build/BUILD + '[' /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le '!=' / ']' + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le ++ dirname /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le + mkdir -p /builddir/build/BUILDROOT + mkdir /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le + CFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CFLAGS + CXXFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection' + export CXXFLAGS + FFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FFLAGS + FCFLAGS='-O2 -fexceptions -g -grecord-gcc-switches -pipe -Wall -Werror=format-security -Wp,-D_FORTIFY_SOURCE=2 -Wp,-D_GLIBCXX_ASSERTIONS -specs=/usr/lib/rpm/redhat/redhat-hardened-cc1 -fstack-protector-strong -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -m64 -mcpu=power8 -mtune=power8 -fasynchronous-unwind-tables -fstack-clash-protection -I/usr/lib64/gfortran/modules' + export FCFLAGS + VALAFLAGS=-g + export VALAFLAGS + LDFLAGS='-Wl,-z,relro -Wl,--as-needed -Wl,-z,now -specs=/usr/lib/rpm/redhat/redhat-hardened-ld -specs=/usr/lib/rpm/redhat/redhat-annobin-cc1 -Wl,--build-id=sha1 -specs=/usr/lib/rpm/redhat/redhat-package-notes' + export LDFLAGS + LT_SYS_LIBRARY_PATH=/usr/lib64: + export LT_SYS_LIBRARY_PATH + CC=gcc + export CC + CXX=g++ + export CXX + cd seqan-1.4.2 + /usr/bin/make install DESTDIR=/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le 'INSTALL=/usr/bin/install -p' -C build/Release make: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles /builddir/build/BUILD/seqan-1.4.2/build/Release//CMakeFiles/progress.marks /usr/bin/make -f CMakeFiles/Makefile2 all make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/dfi/CMakeFiles/dfi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/dfi/CMakeFiles/dfi.dir/build.make core/apps/dfi/CMakeFiles/dfi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/dfi/CMakeFiles/dfi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 1%] Built target dfi /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/compute_gain.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/compute_gain.dir/build.make core/apps/fiona/CMakeFiles/compute_gain.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/compute_gain.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 3%] Built target compute_gain /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona.dir/build.make core/apps/fiona/CMakeFiles/fiona.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 4%] Built target fiona /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/fiona/CMakeFiles/fiona_illumina.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/fiona/CMakeFiles/fiona_illumina.dir/build.make core/apps/fiona/CMakeFiles/fiona_illumina.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/fiona/CMakeFiles/fiona_illumina.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 6%] Built target fiona_illumina /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/mason/CMakeFiles/mason.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/mason/CMakeFiles/mason.dir/build.make core/apps/mason/CMakeFiles/mason.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/mason/CMakeFiles/mason.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 8%] Built target mason /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/micro_razers/CMakeFiles/micro_razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/micro_razers/CMakeFiles/micro_razers.dir/build.make core/apps/micro_razers/CMakeFiles/micro_razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/micro_razers/CMakeFiles/micro_razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 9%] Built target micro_razers /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/pair_align/CMakeFiles/pair_align.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/pair_align/CMakeFiles/pair_align.dir/build.make core/apps/pair_align/CMakeFiles/pair_align.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/pair_align/CMakeFiles/pair_align.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 11%] Built target pair_align /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build.make core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_prepare_sam.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 12%] Built target rabema_prepare_sam /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build.make core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_build_gold_standard.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 14%] Built target rabema_build_gold_standard /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_evaluate.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build.make core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_evaluate.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_evaluate /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/rabema/CMakeFiles/rabema_do_search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/rabema/CMakeFiles/rabema_do_search.dir/build.make core/apps/rabema/CMakeFiles/rabema_do_search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/rabema/CMakeFiles/rabema_do_search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 16%] Built target rabema_do_search /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers/CMakeFiles/razers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers/CMakeFiles/razers.dir/build.make core/apps/razers/CMakeFiles/razers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/razers/CMakeFiles/razers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 19%] Built target razers /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2 /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/razers2/CMakeFiles/razers2.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/razers2/CMakeFiles/razers2.dir/build.make core/apps/razers2/CMakeFiles/razers2.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/razers2/CMakeFiles/razers2.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 20%] Built target razers2 /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 22%] Built target sak /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build.make core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/sam2matrix/CMakeFiles/sam2matrix.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 24%] Built target sam2matrix /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/samcat/CMakeFiles/samcat.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/samcat/CMakeFiles/samcat.dir/build.make core/apps/samcat/CMakeFiles/samcat.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/samcat/CMakeFiles/samcat.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target samcat /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build.make core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/seqan_tcoffee/CMakeFiles/seqan_tcoffee.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 25%] Built target seqan_tcoffee /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/seqcons/CMakeFiles/seqcons.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/seqcons/CMakeFiles/seqcons.dir/build.make core/apps/seqcons/CMakeFiles/seqcons.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/seqcons/CMakeFiles/seqcons.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 27%] Built target seqcons /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/snp_store/CMakeFiles/snp_store.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/snp_store/CMakeFiles/snp_store.dir/build.make core/apps/snp_store/CMakeFiles/snp_store.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/snp_store/CMakeFiles/snp_store.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target snp_store /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/splazers/CMakeFiles/splazers.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/splazers/CMakeFiles/splazers.dir/build.make core/apps/splazers/CMakeFiles/splazers.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/splazers/CMakeFiles/splazers.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 29%] Built target splazers /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/stellar/CMakeFiles/stellar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/stellar/CMakeFiles/stellar.dir/build.make core/apps/stellar/CMakeFiles/stellar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/stellar/CMakeFiles/stellar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 30%] Built target stellar /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/tree_recon/CMakeFiles/tree_recon.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f core/apps/tree_recon/CMakeFiles/tree_recon.dir/build.make core/apps/tree_recon/CMakeFiles/tree_recon.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'core/apps/tree_recon/CMakeFiles/tree_recon.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target tree_recon /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/CMakeFiles/seqan_extras.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/CMakeFiles/seqan_extras.dir/build.make extras/CMakeFiles/seqan_extras.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/CMakeFiles/seqan_extras.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target seqan_extras /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/alf/CMakeFiles/alf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/alf/CMakeFiles/alf.dir/build.make extras/apps/alf/CMakeFiles/alf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/alf/CMakeFiles/alf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target alf /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build.make extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/breakpoint_calculator/CMakeFiles/breakpoint_calculator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 32%] Built target breakpoint_calculator /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/bisar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/bisar.dir/build.make extras/apps/bs_tools/CMakeFiles/bisar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/bisar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 33%] Built target bisar /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/casbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/casbar.dir/build.make extras/apps/bs_tools/CMakeFiles/casbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/casbar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 35%] Built target casbar /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/bs_tools/CMakeFiles/four2three.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/bs_tools/CMakeFiles/four2three.dir/build.make extras/apps/bs_tools/CMakeFiles/four2three.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/bs_tools/CMakeFiles/four2three.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 37%] Built target four2three /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_bam_coverage.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_bam_coverage /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build.make extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/fx_tools/CMakeFiles/fx_fastq_stats.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 38%] Built target fx_fastq_stats /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/gustaf/CMakeFiles/gustaf.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/gustaf/CMakeFiles/gustaf.dir/build.make extras/apps/gustaf/CMakeFiles/gustaf.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/gustaf/CMakeFiles/gustaf.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 40%] Built target gustaf /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/insegt/CMakeFiles/insegt.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/insegt/CMakeFiles/insegt.dir/build.make extras/apps/insegt/CMakeFiles/insegt.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/insegt/CMakeFiles/insegt.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 41%] Built target insegt /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_sim.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_sim.dir/build.make extras/apps/mason2/CMakeFiles/mason_sim.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_sim.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target mason_sim /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_genome.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_genome.dir/build.make extras/apps/mason2/CMakeFiles/mason_genome.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_genome.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_genome /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_methylation.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_methylation.dir/build.make extras/apps/mason2/CMakeFiles/mason_methylation.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_methylation.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 51%] Built target mason_methylation /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build.make extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_frag_sequencing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 53%] Built target mason_frag_sequencing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_variator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_variator.dir/build.make extras/apps/mason2/CMakeFiles/mason_variator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_variator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 54%] Built target mason_variator /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_materializer.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_materializer.dir/build.make extras/apps/mason2/CMakeFiles/mason_materializer.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_materializer.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 56%] Built target mason_materializer /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_simulator.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_simulator.dir/build.make extras/apps/mason2/CMakeFiles/mason_simulator.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_simulator.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 58%] Built target mason_simulator /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_splicing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_splicing.dir/build.make extras/apps/mason2/CMakeFiles/mason_splicing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_splicing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 59%] Built target mason_splicing /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/mason2/CMakeFiles/mason_tests.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/mason2/CMakeFiles/mason_tests.dir/build.make extras/apps/mason2/CMakeFiles/mason_tests.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/mason2/CMakeFiles/mason_tests.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target mason_tests /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_plot_thumbnails.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 61%] Built target roi_plot_thumbnails /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build.make extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/bam2roi.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 64%] Built target bam2roi /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build.make extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/ngs_roi/CMakeFiles/roi_feature_projection.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 67%] Built target roi_feature_projection /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 69%] Built target param_chooser /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build.make extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/param_chooser/CMakeFiles/test_funcs_param_chooser.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 70%] Built target test_funcs_param_chooser /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3.dir/build.make extras/apps/razers3/CMakeFiles/razers3.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 72%] Built target razers3 /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build.make extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_simulate_reads.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 74%] Built target razers3_simulate_reads /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3 /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build.make extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/razers3/CMakeFiles/razers3_quality2prob.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 75%] Built target razers3_quality2prob /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/rep_sep/CMakeFiles/rep_sep.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build.make extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/rep_sep/CMakeFiles/rep_sep.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 77%] Built target rep_sep /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/search.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/search.dir/build.make extras/apps/searchjoin/CMakeFiles/search.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/search.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 79%] Built target search /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/searchjoin/CMakeFiles/join.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/searchjoin/CMakeFiles/join.dir/build.make extras/apps/searchjoin/CMakeFiles/join.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/searchjoin/CMakeFiles/join.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 80%] Built target join /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_demultiplex.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 82%] Built target test_sflex_demultiplex /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_trimming.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 83%] Built target test_sflex_trimming /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_adapter.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 85%] Built target test_sflex_adapter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/test_sflex_general_processing.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 87%] Built target test_sflex_general_processing /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexlib.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 88%] Built target seqan_flexlib /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexQC.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 90%] Built target sflexQC /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexAR.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 91%] Built target sflexAR /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexDMulti.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 93%] Built target sflexDMulti /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/sflexFilter.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 95%] Built target sflexFilter /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build.make extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/seqan_flexbar/CMakeFiles/seqan_flexbar.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 96%] Built target seqan_flexbar /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/sgip/CMakeFiles/sgip.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/sgip/CMakeFiles/sgip.dir/build.make extras/apps/sgip/CMakeFiles/sgip.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/sgip/CMakeFiles/sgip.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 98%] Built target sgip /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/depend make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp /builddir/build/BUILD/seqan-1.4.2/build/Release/extras/apps/variant_comp/CMakeFiles/variant_comp.dir/DependInfo.cmake --color= make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/make -f extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build.make extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build make[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[2]: Nothing to be done for 'extras/apps/variant_comp/CMakeFiles/variant_comp.dir/build'. make[2]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [100%] Built target variant_comp make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 0 /usr/bin/make -f CMakeFiles/Makefile2 preinstall make[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' make[1]: Nothing to be done for 'preinstall'. make[1]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "Release" -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/dfi -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/dfi/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/dfi/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/dfi/example/fasta1.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/dfi/example/fasta2.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/fiona -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/compute_gain -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/fiona/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/fiona/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/fiona/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/mason -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason/example/SRR018294.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason/example/SRR018311.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason/example/SRR026674.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason/example/SRR049254.1.1M.error_dist -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/micro_razers -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/micro_razers/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/micro_razers/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/micro_razers/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/micro_razers/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/micro_razers/example/reads.fa.result -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/pair_align -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/pair_align/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/pair_align/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_prepare_sam -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_build_gold_standard -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_evaluate -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_prepare_sam -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_build_gold_standard -- Up-to-date: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_evaluate -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/rabema/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/rabema/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/razers -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers/example/reads2.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/razers2 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers2/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers2/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers2/example/genome.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers2/example/reads.fa -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers2/example/reads2.fa gmake[1]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/gmake -f CMakeFiles/Makefile2 sak_doc gmake[2]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/cmake -S/builddir/build/BUILD/seqan-1.4.2 -B/builddir/build/BUILD/seqan-1.4.2/build/Release --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /builddir/build/BUILD/seqan-1.4.2/build/Release/CMakeFiles 2 /usr/bin/gmake -f CMakeFiles/Makefile2 core/apps/sak/CMakeFiles/sak_doc.dir/all gmake[3]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core /builddir/build/BUILD/seqan-1.4.2/build/Release/core/CMakeFiles/seqan_core.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/CMakeFiles/seqan_core.dir/build.make core/CMakeFiles/seqan_core.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for 'core/CMakeFiles/seqan_core.dir/build'. gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 0%] Built target seqan_core /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak.dir/DependInfo.cmake --color= gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak.dir/build.make core/apps/sak/CMakeFiles/sak.dir/build gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' gmake[4]: Nothing to be done for 'core/apps/sak/CMakeFiles/sak.dir/build'. gmake[4]: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' [ 50%] Built target sak /usr/bin/gmake -f core/apps/sak/CMakeFiles/sak_doc.dir/build.make core/apps/sak/CMakeFiles/sak_doc.dir/depend gmake[4]: Entering directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' cd /builddir/build/BUILD/seqan-1.4.2/build/Release && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /builddir/build/BUILD/seqan-1.4.2 /builddir/build/BUILD/seqan-1.4.2/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak /builddir/build/BUILD/seqan-1.4.2/build/Release/core/apps/sak/CMakeFiles/sak_doc.dir/DependInfo.cmake --color= gmake[4]: Leaving directory 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/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rep_sep -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/rep_sep/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/rep_sep/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/join -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/searchjoin/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/searchjoin/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/seqan_flexbar -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/seqan_flexbar/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/seqan_flexbar/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/sgip -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/README -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/iso_m2D_m196.A01 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/iso_r01_m200.A00 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/iso_r01_m200.A01 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/iso_r01_m200.B00 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/iso_r01_m200.B01 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/latin-4 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/lattice-4 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip/example/sts-7 -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/variant_comp -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/variant_comp/LICENSE -- Installing: /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/variant_comp/README make: Leaving directory '/builddir/build/BUILD/seqan-1.4.2/build/Release' + mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/include/seqan + cp -pr extras/include/seqan/LICENSE extras/include/seqan/align_extend extras/include/seqan/align_extend.h extras/include/seqan/align_profile extras/include/seqan/align_profile.h extras/include/seqan/align_split extras/include/seqan/align_split.h extras/include/seqan/alignment_free extras/include/seqan/alignment_free.h extras/include/seqan/bam_io extras/include/seqan/basic extras/include/seqan/basic_extras.h extras/include/seqan/bed_io extras/include/seqan/bed_io.h extras/include/seqan/find extras/include/seqan/find_extras.h extras/include/seqan/find_motif extras/include/seqan/find_motif.h extras/include/seqan/index extras/include/seqan/index_extras.h extras/include/seqan/journaled_set extras/include/seqan/journaled_set.h extras/include/seqan/math extras/include/seqan/math.h extras/include/seqan/misc extras/include/seqan/misc_extras.h extras/include/seqan/parse_lm extras/include/seqan/parse_lm.h extras/include/seqan/roi_io extras/include/seqan/roi_io.h extras/include/seqan/sequence extras/include/seqan/sequence_extras.h extras/include/seqan/statistics extras/include/seqan/statistics.h extras/include/seqan/translation extras/include/seqan/translation.h extras/include/seqan/vcf_io extras/include/seqan/vcf_io.h /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/include/seqan + cp -pr core/include/seqan/LICENSE core/include/seqan/align core/include/seqan/align.h core/include/seqan/arg_parse core/include/seqan/arg_parse.h core/include/seqan/bam_io core/include/seqan/bam_io.h core/include/seqan/basic core/include/seqan/basic.h core/include/seqan/consensus core/include/seqan/consensus.h core/include/seqan/file core/include/seqan/file.h core/include/seqan/find core/include/seqan/find.h core/include/seqan/gff_io core/include/seqan/gff_io.h core/include/seqan/graph_algorithms core/include/seqan/graph_algorithms.h core/include/seqan/graph_align core/include/seqan/graph_align.h core/include/seqan/graph_msa core/include/seqan/graph_msa.h core/include/seqan/graph_types core/include/seqan/graph_types.h core/include/seqan/index core/include/seqan/index.h core/include/seqan/map core/include/seqan/map.h core/include/seqan/misc core/include/seqan/modifier core/include/seqan/modifier.h core/include/seqan/parallel core/include/seqan/parallel.h core/include/seqan/pipe core/include/seqan/pipe.h core/include/seqan/platform core/include/seqan/platform.h core/include/seqan/random core/include/seqan/random.h core/include/seqan/score core/include/seqan/score.h core/include/seqan/seeds core/include/seqan/seeds.h core/include/seqan/seq_io core/include/seqan/seq_io.h core/include/seqan/sequence core/include/seqan/sequence.h core/include/seqan/sequence_journaled core/include/seqan/sequence_journaled.h core/include/seqan/store core/include/seqan/store.h core/include/seqan/stream core/include/seqan/stream.h core/include/seqan/system core/include/seqan/system.h core/include/seqan/version.h /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/include/seqan + mkdir -p seqandoc + cp -pr /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/alf /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/breakpoint_calculator /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/bs_tools /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/dfi /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/fiona /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/fx_tools /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/gustaf /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/insegt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/mason2 /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/micro_razers /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/ngs_roi /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/pair_align /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/param_chooser /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/rabema /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers2 /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/razers3 /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/rep_sep /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sak /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sam2matrix /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/samcat /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/searchjoin /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/seqan_flexbar /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/seqan_tcoffee /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/seqcons /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/sgip /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/snp_store /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/splazers /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/stellar /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/tree_recon /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan/variant_comp seqandoc + rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan + rm -f 'seqandoc/*.txt' + mv /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/join /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/searchjoin + find /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin -type f -name '*.h' -exec chmod 0755 '{}' ';' + /usr/bin/find-debuginfo -j5 --strict-build-id -m -i --build-id-seed 1.4.2-50.fc38 --unique-debug-suffix -1.4.2-50.fc38.ppc64le --unique-debug-src-base seqan-1.4.2-50.fc38.ppc64le --run-dwz --dwz-low-mem-die-limit 10000000 --dwz-max-die-limit 50000000 -S debugsourcefiles.list /builddir/build/BUILD/seqan-1.4.2 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/bam2roi extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/bisar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/alf extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/casbar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/breakpoint_calculator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/compute_gain extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/dfi extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/fiona extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/four2three extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/fx_bam_coverage extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/gustaf extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/insegt extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/mason extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/mason_frag_sequencing extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/mason_genome extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/mason_materializer extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/mason_simulator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/mason_variator extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/micro_razers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/pair_align extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/param_chooser extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_build_gold_standard extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_evaluate extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rabema_prepare_sam extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/razers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/razers2 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/razers3 extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/rep_sep extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/roi_feature_projection extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/roi_plot_thumbnails extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/sak extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/sam2matrix extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/samcat extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/searchjoin extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/seqan_flexbar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/seqan_tcoffee extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/seqcons extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/sgip extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/snp_store extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/splazers extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/stellar extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/tree_recon extracting debug info from /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/bin/variant_comp original debug info size: 580736kB, size after compression: 508544kB /usr/bin/sepdebugcrcfix: Updated 43 CRC32s, 0 CRC32s did match. 24419 blocks + /usr/lib/rpm/check-buildroot + /usr/lib/rpm/redhat/brp-ldconfig + /usr/lib/rpm/brp-compress + /usr/lib/rpm/redhat/brp-strip-lto /usr/bin/strip + /usr/lib/rpm/brp-strip-static-archive /usr/bin/strip + /usr/lib/rpm/check-rpaths + /usr/lib/rpm/redhat/brp-mangle-shebangs + /usr/lib/rpm/brp-remove-la-files + /usr/lib/rpm/redhat/brp-python-bytecompile '' 1 0 + /usr/lib/rpm/redhat/brp-python-hardlink Processing files: seqan-1.4.2-50.fc38.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.yoNgRF + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.XVKAi9 + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan + RPM_EC=0 ++ jobs -p + exit 0 Provides: bundled(gnulib) seqan = 1.4.2-50.fc38 seqan(ppc-64) = 1.4.2-50.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Requires: ld64.so.2()(64bit) ld64.so.2(GLIBC_2.22)(64bit) ld64.so.2(GLIBC_2.23)(64bit) libbz2.so.1()(64bit) libc.so.6()(64bit) libc.so.6(GLIBC_2.17)(64bit) libc.so.6(GLIBC_2.25)(64bit) libc.so.6(GLIBC_2.32)(64bit) libc.so.6(GLIBC_2.33)(64bit) libc.so.6(GLIBC_2.34)(64bit) libc.so.6(GLIBC_2.35)(64bit) libc.so.6(GLIBC_2.36)(64bit) libemon.so.1.3.1()(64bit) libgomp.so.1()(64bit) libgomp.so.1(GOMP_1.0)(64bit) libgomp.so.1(GOMP_4.0)(64bit) libgomp.so.1(GOMP_4.5)(64bit) libgomp.so.1(OMP_1.0)(64bit) libgomp.so.1(OMP_2.0)(64bit) libgomp.so.1(OMP_3.0)(64bit) libm.so.6()(64bit) libm.so.6(GLIBC_2.17)(64bit) libm.so.6(GLIBC_2.23)(64bit) libm.so.6(GLIBC_2.29)(64bit) libm.so.6(GLIBC_2.32)(64bit) libz.so.1()(64bit) libz.so.1(ZLIB_1.2.2.3)(64bit) libz.so.1(ZLIB_1.2.3.3)(64bit) rtld(GNU_HASH) Processing files: seqan-devel-1.4.2-50.fc38.ppc64le Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.TRYvc0 + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan-devel + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan-devel + cp -pr README.rst /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan-devel + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.05QBkg + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-devel + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-devel + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-devel + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-devel + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-devel + RPM_EC=0 ++ jobs -p + exit 0 Provides: seqan-devel = 1.4.2-50.fc38 seqan-devel(ppc-64) = 1.4.2-50.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-doc-1.4.2-50.fc38.noarch Executing(%doc): /bin/sh -e /var/tmp/rpm-tmp.Sk3dzI + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + DOCDIR=/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan-doc + export LC_ALL=C + LC_ALL=C + export DOCDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan-doc + cp -pr seqandoc /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/doc/seqan-doc + RPM_EC=0 ++ jobs -p + exit 0 Executing(%license): /bin/sh -e /var/tmp/rpm-tmp.qxDygx + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + LICENSEDIR=/builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-doc + export LC_ALL=C + LC_ALL=C + export LICENSEDIR + /usr/bin/mkdir -p /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-doc + cp -pr BSD.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-doc + cp -pr GPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-doc + cp -pr LGPLv3+.txt /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le/usr/share/licenses/seqan-doc + RPM_EC=0 ++ jobs -p + exit 0 Provides: seqan-doc = 1.4.2-50.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-debugsource-1.4.2-50.fc38.ppc64le Provides: seqan-debugsource = 1.4.2-50.fc38 seqan-debugsource(ppc-64) = 1.4.2-50.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Processing files: seqan-debuginfo-1.4.2-50.fc38.ppc64le Provides: debuginfo(build-id) = 06d3466c4db03f21419210ff260bdfc1a5b0190d debuginfo(build-id) = 121aa47747fcae9a1a949596d921c66e9c117383 debuginfo(build-id) = 1e09f07e1296080871a74c012d2e9eea152781ef debuginfo(build-id) = 2412f3deaf7f17c52e6c465eb53b4b682aa3e2a8 debuginfo(build-id) = 2bbdda6c32da5745896efc5c9675da210e11a19a debuginfo(build-id) = 318f05cb9e7345c5a841de679f4a59f6f538ba25 debuginfo(build-id) = 36bf2b6a4ea8cc25789cb9e2e69bdac61dd8bcf9 debuginfo(build-id) = 40a633fe93707e1b798a5be6f736af1e8577ca66 debuginfo(build-id) = 45e29e8ffa036e78c1ffd60765d5d4cad1a6d212 debuginfo(build-id) = 4c17211846017b53e0ca7967e612389507745d83 debuginfo(build-id) = 4c844cc310fd165e6f40ed0cb2dac8ad04cf0160 debuginfo(build-id) = 4e0306ffe19e3b3dc0c0b2cfa354ac9570f5b7cc debuginfo(build-id) = 531a1441b4f6d889409b0349d8f7e420ca5ddea3 debuginfo(build-id) = 55cd729ac0df864a1c80451ef3818cfb1ca285bd debuginfo(build-id) = 59586747a58c84955390d2ff3c0c55eb1ee0b523 debuginfo(build-id) = 64ab42c0f3731a1e99e32b6d0cfff94d59148de7 debuginfo(build-id) = 69130ad30923923072b2706d4bda09b4ffa5a965 debuginfo(build-id) = 69a1f8e08eb536141fcf4e0f14606d6e08891136 debuginfo(build-id) = 6a65bf6ac3dad5cd21bc566809fa996972f08d81 debuginfo(build-id) = 6cddfe8c1c604d88c8e026ad3a76ae461aaad1da debuginfo(build-id) = 6f9411e0794a7f0889f4d935eed865491de91351 debuginfo(build-id) = 704e110634aead1d4bb72f7da3bc7457820bc16b debuginfo(build-id) = 723dc30b074236ca089213e47dde754fc011f6fd debuginfo(build-id) = 728ce8a04a4005588c4b9f7543ea5ab2d84b5f32 debuginfo(build-id) = 78cb93b63e09eb2ad12a920d5f82b554ca7938e6 debuginfo(build-id) = 9001468a8e8d876f7f00c6345918ac9377fee08e debuginfo(build-id) = a4542a34dd6263ae55d7e7c646399cd99bb9f816 debuginfo(build-id) = a5dc22b4aa6e5fd3e71723f7a44453ca8055945c debuginfo(build-id) = aadee487cc915143be3e4aee0476325277fb0d62 debuginfo(build-id) = acbff622deca14d11e70a6e04cbe6f0afb860c08 debuginfo(build-id) = b1c1960d42118c5fc1c3047d0f607ee4d936c590 debuginfo(build-id) = c17963d29ec06c5cbeb643a63d45d25121a342ab debuginfo(build-id) = c2d204c61e0722677e9f98b5092791e404987dfe debuginfo(build-id) = c5d58c941cd06885d65bb08cd65e373e37e09b5f debuginfo(build-id) = c8cb29b17625d621fe41194778773501c723e061 debuginfo(build-id) = cad603349b15b3cfc285c73ff43fee9fd5c1db61 debuginfo(build-id) = e2c19cc829b557d451eeb049d0809de83b0afe08 debuginfo(build-id) = e5091991f5ebc25555fa7b40fee4cafb7f2babc4 debuginfo(build-id) = e59b540d4fe3e78750ea3591a5880099cf7408ba debuginfo(build-id) = e63625da8ecedbee0d3104525153ab25eda3be32 debuginfo(build-id) = e8d68169681e66f1bea7cf8264542d28b18499dd debuginfo(build-id) = ea8e95f0b822fac4a251a3c80d911f1db65e0004 debuginfo(build-id) = ee66c45cc63d325c1e25f49d8f0069461b37d21a seqan-debuginfo = 1.4.2-50.fc38 seqan-debuginfo(ppc-64) = 1.4.2-50.fc38 Requires(rpmlib): rpmlib(CompressedFileNames) <= 3.0.4-1 rpmlib(FileDigests) <= 4.6.0-1 rpmlib(PayloadFilesHavePrefix) <= 4.0-1 Recommends: seqan-debugsource(ppc-64) = 1.4.2-50.fc38 Checking for unpackaged file(s): /usr/lib/rpm/check-files /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le Wrote: /builddir/build/RPMS/seqan-doc-1.4.2-50.fc38.noarch.rpm Wrote: /builddir/build/RPMS/seqan-devel-1.4.2-50.fc38.ppc64le.rpm Wrote: /builddir/build/RPMS/seqan-debugsource-1.4.2-50.fc38.ppc64le.rpm Wrote: /builddir/build/RPMS/seqan-1.4.2-50.fc38.ppc64le.rpm Wrote: /builddir/build/RPMS/seqan-debuginfo-1.4.2-50.fc38.ppc64le.rpm Executing(%clean): /bin/sh -e /var/tmp/rpm-tmp.DNDlDL + umask 022 + cd /builddir/build/BUILD + cd seqan-1.4.2 + /usr/bin/rm -rf /builddir/build/BUILDROOT/seqan-1.4.2-50.fc38.ppc64le + RPM_EC=0 ++ jobs -p + exit 0 Executing(rmbuild): /bin/sh -e /var/tmp/rpm-tmp.jRxwvk + umask 022 + cd /builddir/build/BUILD + rm -rf seqan-1.4.2 seqan-1.4.2.gemspec + RPM_EC=0 ++ jobs -p + exit 0 Finish: rpmbuild seqan-1.4.2-50.fc38.src.rpm Finish: build phase for seqan-1.4.2-50.fc38.src.rpm INFO: chroot_scan: 3 files copied to /var/lib/copr-rpmbuild/results/chroot_scan INFO: /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root/var/log/dnf.rpm.log /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root/var/log/dnf.librepo.log /var/lib/mock/fedora-rawhide-ppc64le-1672302897.527342/root/var/log/dnf.log INFO: Done(/var/lib/copr-rpmbuild/results/seqan-1.4.2-50.fc38.src.rpm) Config(child) 46 minutes 18 seconds INFO: Results and/or logs in: /var/lib/copr-rpmbuild/results INFO: Cleaning up build root ('cleanup_on_success=True') Start: clean chroot INFO: unmounting tmpfs. Finish: clean chroot Finish: run Running RPMResults tool